greenelab django-genes issues

greenelab / django-genes

A Django package to represent genes

BSD 3-Clause "New" or "Revised" License

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issues

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Replace BaseCommand.option_list with add_arguments() method

#18 dongbohu closed 5 years ago
1
genes_load_wb.py: "--taxonomy_id" argument not being used

#17 dongbohu opened 5 years ago
5
"BaseCommand.option_list" is deprecated

#16 dongbohu opened 5 years ago
0
If sending Entrez IDs to translate_genes() function in utils.py, the response returns the search keys (these Entrez IDs) as strings, rather than integers.

#15 rzelayafavila opened 6 years ago
0
Adding 'full=True' to crossrefdb attribute in CrossRefResource in api.py

#14 rzelayafavila closed 6 years ago
3
Possibly add Gene_Name (i.e. standard_name in the Gene model) and/or HGNC identifiers for UniProt identifiers to load with genes_load_uniprot.py?

#13 rzelayafavila opened 6 years ago
0
Change in format for HGNC identifiers.

#12 rzelayafavila opened 6 years ago
0
bitbucket: API exposes both `id` and `pk`

#11 rzelayafavila opened 6 years ago
0
bitbucket: Abstract gene search functionality in Adage server front-end to its own npm installable package, which we can then use across webservers.

#10 rzelayafavila opened 6 years ago
0
bitbucket: CrossRefDB names need to match in a case-insensitive manner

#9 rzelayafavila opened 6 years ago
1
bitbucket: Redundant indexing fields?

#8 rzelayafavila opened 6 years ago
1
bitbucket: Confusion over standard_name and systematic_name

#7 rzelayafavila opened 6 years ago
0
bitbucket: Python 3 compatibility

#6 rzelayafavila opened 6 years ago
0
bitbucket: Add test cases for management commands

#5 rzelayafavila opened 6 years ago
0
Fix of Issue #3: Skip NEWENTRY line when loading gene info file

#4 dongbohu closed 6 years ago
0
"NEWENTRY" line in Home_sapiens.gene_info should be filtered out

#3 dongbohu closed 6 years ago
0
Open Issues in Bitbucket Repo

#2 dongbohu closed 6 years ago
1
django-genes: migrate to github

#1 dongbohu closed 7 years ago
0