Ping deep-review contributors to determine if they want to be acknowledged

[cgreene]

We will @mention the contributors to each here. Those who respond by a defined date will be included with the acknowledgements.

[cgreene]

Hello Deep Review folks! We are writing a manuscript describing manubot that talks about the deep review process. We would like to acknowledge you by name. Please let us know if you approve and, if so, what name you would like us to use. @traversc @brettbj @alxndrkalinin @bdo311 @gwaygenomics @enricoferrero @agapow @zietzm @michaelmhoffman @xieconnect @gailrosen @blengerich @jisraeli @jacklanchantin @sw1 @annecarpenter @avantishri @j3xugit @evancofer @lavenderca @srinituraga @alexandari @luzh2 @davharris @davedecaprio @qiyanjun @akundaje @yfpeng @laurakwiley @mrwns @siminab @swamidass @austinvhuang

[gailrosen]

Sure. Gail Rosen

[AnneCarpenter]

Sure, the same name as on the paper would be fine.

-- Sent from my mobile phone

[srinituraga]

Srinivas C. Turaga

[evancofer]

Thanks! I approve. The name to use is Evan M. Cofer

On Thu, Jun 14, 2018, 1:51 PM Casey Greene notifications@github.com wrote:

Hello Deep Review folks! We are writing a manuscript describing manubot that talks about the deep review process. We would like to acknowledge you by name. Please let us know if you approve and, if so, what name you would like us to use. @traversc https://github.com/traversc @brettbj https://github.com/brettbj @alxndrkalinin https://github.com/alxndrkalinin @bdo311 https://github.com/bdo311 @gwaygenomics https://github.com/gwaygenomics @enricoferrero https://github.com/enricoferrero @agapow https://github.com/agapow @zietzm https://github.com/zietzm @michaelmhoffman https://github.com/michaelmhoffman @XieConnect https://github.com/XieConnect @gailrosen https://github.com/gailrosen @blengerich https://github.com/blengerich @jisraeli https://github.com/jisraeli @jacklanchantin https://github.com/jacklanchantin @sw1 https://github.com/sw1 @AnneCarpenter https://github.com/AnneCarpenter @AvantiShri https://github.com/AvantiShri @j3xugit https://github.com/j3xugit @evancofer https://github.com/evancofer @lavenderca https://github.com/lavenderca @srinituraga https://github.com/srinituraga @alexandari https://github.com/alexandari @luzh2 https://github.com/luzh2 @davharris https://github.com/davharris @DaveDeCaprio https://github.com/DaveDeCaprio @qiyanjun https://github.com/qiyanjun @akundaje https://github.com/akundaje @yfpeng https://github.com/yfpeng @laurakwiley https://github.com/laurakwiley @mrwns https://github.com/mrwns @SiminaB https://github.com/SiminaB @swamidass https://github.com/swamidass @austinvhuang https://github.com/austinvhuang

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[akundaje]

Yes approved

On Thu, Jun 14, 2018 at 10:51 AM Casey Greene notifications@github.com wrote:

Hello Deep Review folks! We are writing a manuscript describing manubot that talks about the deep review process. We would like to acknowledge you by name. Please let us know if you approve and, if so, what name you would like us to use. @traversc https://github.com/traversc @brettbj https://github.com/brettbj @alxndrkalinin https://github.com/alxndrkalinin @bdo311 https://github.com/bdo311 @gwaygenomics https://github.com/gwaygenomics @enricoferrero https://github.com/enricoferrero @agapow https://github.com/agapow @zietzm https://github.com/zietzm @michaelmhoffman https://github.com/michaelmhoffman @XieConnect https://github.com/XieConnect @gailrosen https://github.com/gailrosen @blengerich https://github.com/blengerich @jisraeli https://github.com/jisraeli @jacklanchantin https://github.com/jacklanchantin @sw1 https://github.com/sw1 @AnneCarpenter https://github.com/AnneCarpenter @AvantiShri https://github.com/AvantiShri @j3xugit https://github.com/j3xugit @evancofer https://github.com/evancofer @lavenderca https://github.com/lavenderca @srinituraga https://github.com/srinituraga @alexandari https://github.com/alexandari @luzh2 https://github.com/luzh2 @davharris https://github.com/davharris @DaveDeCaprio https://github.com/DaveDeCaprio @qiyanjun https://github.com/qiyanjun @akundaje https://github.com/akundaje @yfpeng https://github.com/yfpeng @laurakwiley https://github.com/laurakwiley @mrwns https://github.com/mrwns @SiminaB https://github.com/SiminaB @swamidass https://github.com/swamidass @austinvhuang https://github.com/austinvhuang

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[sw1]

Stephen Woloszynek

---

From: Casey Greene notifications@github.com Sent: Thursday, June 14, 2018 1:51:53 PM To: greenelab/meta-review Cc: Stephen Woloszynek; Mention Subject: Re: [greenelab/meta-review] Ping deep-review and manubot-rootstock contributors to determine if they want to be acknowledged (#50)

Hello Deep Review folks! We are writing a manuscript describing manubot that talks about the deep review process. We would like to acknowledge you by name. Please let us know if you approve and, if so, what name you would like us to use. @traverschttps://github.com/traversc @brettbjhttps://github.com/brettbj @alxndrkalininhttps://github.com/alxndrkalinin @bdo311https://github.com/bdo311 @gwaygenomicshttps://github.com/gwaygenomics @enricoferrerohttps://github.com/enricoferrero @agapowhttps://github.com/agapow @zietzmhttps://github.com/zietzm @michaelmhoffmanhttps://github.com/michaelmhoffman @XieConnecthttps://github.com/XieConnect @gailrosenhttps://github.com/gailrosen @blengerichhttps://github.com/blengerich @jisraelihttps://github.com/jisraeli @jacklanchantinhttps://github.com/jacklanchantin @sw1https://github.com/sw1 @AnneCarpenterhttps://github.com/AnneCarpenter @AvantiShrihttps://github.com/AvantiShri @j3xugithttps://github.com/j3xugit @evancoferhttps://github.com/evancofer @lavendercahttps://github.com/lavenderca @srinituragahttps://github.com/srinituraga @alexandarihttps://github.com/alexandari @luzh2https://github.com/luzh2 @davharrishttps://github.com/davharris @DaveDeCapriohttps://github.com/DaveDeCaprio @qiyanjunhttps://github.com/qiyanjun @akundajehttps://github.com/akundaje @yfpenghttps://github.com/yfpeng @laurakwileyhttps://github.com/laurakwiley @mrwnshttps://github.com/mrwns @SiminaBhttps://github.com/SiminaB @swamidasshttps://github.com/swamidass @austinvhuanghttps://github.com/austinvhuang

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[alxndrkalinin]

I approve too: Alexandr A. Kalinin

[lavenderca]

Sure! Christopher Lavender

On Thu, Jun 14, 2018 at 1:55 PM Stephen Woloszynek notifications@github.com wrote:

Stephen Woloszynek

---

From: Casey Greene notifications@github.com Sent: Thursday, June 14, 2018 1:51:53 PM To: greenelab/meta-review Cc: Stephen Woloszynek; Mention Subject: Re: [greenelab/meta-review] Ping deep-review and manubot-rootstock contributors to determine if they want to be acknowledged (#50)

Hello Deep Review folks! We are writing a manuscript describing manubot that talks about the deep review process. We would like to acknowledge you by name. Please let us know if you approve and, if so, what name you would like us to use. @traverschttps://github.com/traversc @brettbj< https://github.com/brettbj> @alxndrkalinin< https://github.com/alxndrkalinin> @bdo311https://github.com/bdo311 @gwaygenomicshttps://github.com/gwaygenomics @enricoferrero< https://github.com/enricoferrero> @agapowhttps://github.com/agapow @zietzmhttps://github.com/zietzm @michaelmhoffman< https://github.com/michaelmhoffman> @XieConnect< https://github.com/XieConnect> @gailrosenhttps://github.com/gailrosen @blengerichhttps://github.com/blengerich @jisraeli< https://github.com/jisraeli> @jacklanchantin< https://github.com/jacklanchantin> @sw1https://github.com/sw1 @AnneCarpenterhttps://github.com/AnneCarpenter @AvantiShri< https://github.com/AvantiShri> @j3xugithttps://github.com/j3xugit @evancoferhttps://github.com/evancofer @lavenderca< https://github.com/lavenderca> @srinituragahttps://github.com/srinituraga @alexandarihttps://github.com/alexandari @luzh2https://github.com/luzh2 @davharrishttps://github.com/davharris @DaveDeCaprio< https://github.com/DaveDeCaprio> @qiyanjunhttps://github.com/qiyanjun @akundajehttps://github.com/akundaje @yfpenghttps://github.com/yfpeng @laurakwileyhttps://github.com/laurakwiley @mrwns< https://github.com/mrwns> @SiminaBhttps://github.com/SiminaB @swamidass< https://github.com/swamidass> @austinvhuang< https://github.com/austinvhuang>

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub< https://github.com/greenelab/meta-review/issues/50#issuecomment-397382355>, or mute the thread< https://github.com/notifications/unsubscribe-auth/AIZzAcUyKXZnkXIflyDejzfQCD4QI9xpks5t8qK5gaJpZM4UoG2g

.

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[michaelmhoffman]

Sure. Michael M.\ Hoffman. You can use the same ORCID as in the manuscript.

[laurakwiley]

Sure, Laura K. Wiley

Laura Wiley, Ph.D. Assistant Professor Division of Biomedical Informatics and Personalized Medicine University of Colorado Anschutz Medical Campus

On Thu, Jun 14, 2018 at 11:51 AM, Casey Greene notifications@github.com wrote:

Hello Deep Review folks! We are writing a manuscript describing manubot that talks about the deep review process. We would like to acknowledge you by name. Please let us know if you approve and, if so, what name you would like us to use. @traversc https://github.com/traversc @brettbj https://github.com/brettbj @alxndrkalinin https://github.com/alxndrkalinin @bdo311 https://github.com/bdo311 @gwaygenomics https://github.com/gwaygenomics @enricoferrero https://github.com/enricoferrero @agapow https://github.com/agapow @zietzm https://github.com/zietzm @michaelmhoffman https://github.com/michaelmhoffman @XieConnect https://github.com/XieConnect @gailrosen https://github.com/gailrosen @blengerich https://github.com/blengerich @jisraeli https://github.com/jisraeli @jacklanchantin https://github.com/jacklanchantin @sw1 https://github.com/sw1 @AnneCarpenter https://github.com/AnneCarpenter @AvantiShri https://github.com/AvantiShri @j3xugit https://github.com/j3xugit @evancofer https://github.com/evancofer @lavenderca https://github.com/lavenderca @srinituraga https://github.com/srinituraga @alexandari https://github.com/alexandari @luzh2 https://github.com/luzh2 @davharris https://github.com/davharris @DaveDeCaprio https://github.com/DaveDeCaprio @qiyanjun https://github.com/qiyanjun @akundaje https://github.com/akundaje @yfpeng https://github.com/yfpeng @laurakwiley https://github.com/laurakwiley @mrwns https://github.com/mrwns @SiminaB https://github.com/SiminaB @swamidass https://github.com/swamidass @austinvhuang https://github.com/austinvhuang

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/greenelab/meta-review/issues/50#issuecomment-397382355, or mute the thread https://github.com/notifications/unsubscribe-auth/ABxt0LGeShURMX95t1ZRamjSIk_LXmCvks5t8qK4gaJpZM4UoG2g .

[yfpeng]

Sure. Thanks! – Yifan Peng

[qiyanjun]

I approve. Thanks! - Yanjun Qi

On Jun 14, 2018, at 1:58 PM, Yifan Peng notifications@github.com wrote:

Sure. Thanks! – Yifan Peng

From: Casey Greene [mailto:notifications@github.com] Sent: Thursday, June 14, 2018 1:52 PM To: greenelab/meta-review meta-review@noreply.github.com Cc: Peng, Yifan (NIH/NLM/NCBI) [E] yifan.peng@nih.gov; Mention mention@noreply.github.com Subject: Re: [greenelab/meta-review] Ping deep-review and manubot-rootstock contributors to determine if they want to be acknowledged (#50)

Hello Deep Review folks! We are writing a manuscript describing manubot that talks about the deep review process. We would like to acknowledge you by name. Please let us know if you approve and, if so, what name you would like us to use. @traverschttps://github.com/traversc @brettbjhttps://github.com/brettbj @alxndrkalininhttps://github.com/alxndrkalinin @bdo311https://github.com/bdo311 @gwaygenomicshttps://github.com/gwaygenomics @enricoferrerohttps://github.com/enricoferrero @agapowhttps://github.com/agapow @zietzmhttps://github.com/zietzm @michaelmhoffmanhttps://github.com/michaelmhoffman @XieConnecthttps://github.com/XieConnect @gailrosenhttps://github.com/gailrosen @blengerichhttps://github.com/blengerich @jisraelihttps://github.com/jisraeli @jacklanchantinhttps://github.com/jacklanchantin @sw1https://github.com/sw1 @AnneCarpenterhttps://github.com/AnneCarpenter @AvantiShrihttps://github.com/AvantiShri @j3xugithttps://github.com/j3xugit @evancoferhttps://github.com/evancofer @lavendercahttps://github.com/lavenderca @srinituragahttps://github.com/srinituraga @alexandarihttps://github.com/alexandari @luzh2https://github.com/luzh2 @davharrishttps://github.com/davharris @DaveDeCapriohttps://github.com/DaveDeCaprio @qiyanjunhttps://github.com/qiyanjun @akundajehttps://github.com/akundaje @yfpenghttps://github.com/yfpeng @laurakwileyhttps://github.com/laurakwiley @mrwnshttps://github.com/mrwns @SiminaBhttps://github.com/SiminaB @swamidasshttps://github.com/swamidass @austinvhuanghttps://github.com/austinvhuang

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[j3xugit]

fine with me.

On Thu, Jun 14, 2018 at 12:58 PM, Yifan Peng notifications@github.com wrote:

Sure. Thanks! – Yifan Peng

From: Casey Greene [mailto:notifications@github.com] Sent: Thursday, June 14, 2018 1:52 PM To: greenelab/meta-review meta-review@noreply.github.com Cc: Peng, Yifan (NIH/NLM/NCBI) [E] yifan.peng@nih.gov; Mention < mention@noreply.github.com> Subject: Re: [greenelab/meta-review] Ping deep-review and manubot-rootstock contributors to determine if they want to be acknowledged (#50)

Hello Deep Review folks! We are writing a manuscript describing manubot that talks about the deep review process. We would like to acknowledge you by name. Please let us know if you approve and, if so, what name you would like us to use. @traverschttps://github.com/traversc @brettbj< https://github.com/brettbj> @alxndrkalininhttps://github. com/alxndrkalinin @bdo311https://github.com/bdo311 @gwaygenomics< https://github.com/gwaygenomics> @enricoferrerohttps://github. com/enricoferrero @agapowhttps://github.com/agapow @zietzm< https://github.com/zietzm> @michaelmhoffmanhttps:// github.com/michaelmhoffman @XieConnecthttps://github.com/XieConnect @gailrosenhttps://github.com/gailrosen @blengerichhttps://github. com/blengerich @jisraelihttps://github.com/jisraeli @jacklanchantin< https://github.com/jacklanchantin> @sw1https://github.com/sw1 @AnneCarpenterhttps://github.com/AnneCarpenter @AvantiShri< https://github.com/AvantiShri> @j3xugithttps://github.com/j3xugit @evancoferhttps://github.com/evancofer @lavendercahttps://github. com/lavenderca @srinituragahttps://github.com/srinituraga @alexandari< https://github.com/alexandari> @luzh2https://github.com/luzh2 @davharrishttps://github.com/davharris @DaveDeCapriohttps://github. com/DaveDeCaprio @qiyanjunhttps://github.com/qiyanjun @akundaje< https://github.com/akundaje> @yfpenghttps://github.com/yfpeng @laurakwileyhttps://github.com/laurakwiley @mrwnshttps://github.com/ mrwns @SiminaBhttps://github.com/SiminaB @swamidasshttps://github.com/ swamidass @austinvhuanghttps://github.com/austinvhuang

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--

---

Professor Toyota Technological Institute at Chicago 6045 S. Kenwood Ave. Chicago, IL 60637 fax: 773 834 2557, Google Voice: 773 359 3721 http://ttic.uchicago.edu/~jinbo/

[jacklanchantin]

Yes, I approve. You can use Jack Lanchantin

On Thu, Jun 14, 2018 at 10:51 AM Casey Greene notifications@github.com wrote:

Hello Deep Review folks! We are writing a manuscript describing manubot that talks about the deep review process. We would like to acknowledge you by name. Please let us know if you approve and, if so, what name you would like us to use. @traversc https://github.com/traversc @brettbj https://github.com/brettbj @alxndrkalinin https://github.com/alxndrkalinin @bdo311 https://github.com/bdo311 @gwaygenomics https://github.com/gwaygenomics @enricoferrero https://github.com/enricoferrero @agapow https://github.com/agapow @zietzm https://github.com/zietzm @michaelmhoffman https://github.com/michaelmhoffman @XieConnect https://github.com/XieConnect @gailrosen https://github.com/gailrosen @blengerich https://github.com/blengerich @jisraeli https://github.com/jisraeli @jacklanchantin https://github.com/jacklanchantin @sw1 https://github.com/sw1 @AnneCarpenter https://github.com/AnneCarpenter @AvantiShri https://github.com/AvantiShri @j3xugit https://github.com/j3xugit @evancofer https://github.com/evancofer @lavenderca https://github.com/lavenderca @srinituraga https://github.com/srinituraga @alexandari https://github.com/alexandari @luzh2 https://github.com/luzh2 @davharris https://github.com/davharris @DaveDeCaprio https://github.com/DaveDeCaprio @qiyanjun https://github.com/qiyanjun @akundaje https://github.com/akundaje @yfpeng https://github.com/yfpeng @laurakwiley https://github.com/laurakwiley @mrwns https://github.com/mrwns @SiminaB https://github.com/SiminaB @swamidass https://github.com/swamidass @austinvhuang https://github.com/austinvhuang

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/greenelab/meta-review/issues/50#issuecomment-397382355, or mute the thread https://github.com/notifications/unsubscribe-auth/AFJb_OCyLg7nA1kxTX64nvv0Sxz-JGF1ks5t8qK5gaJpZM4UoG2g .

[brettbj]

Sure

[blengerich]

Sure - Ben Lengerich.

Ben Lengerich http://www.cs.cmu.edu/~blengeri/ | PhD Student, Carnegie Mellon University

[traversc]

Sure -- Travers Ching.

[davharris]

Great.

David J. Harris

On Jun 14, 2018, at 2:16 PM, Ben Lengerich notifications@github.com wrote:

Sure - Ben Lengerich.

On Thu, Jun 14, 2018 at 2:10 PM Brett Beaulieu-Jones < notifications@github.com> wrote:

Sure

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-- Ben Lengerich http://www.cs.cmu.edu/~blengeri/ | PhD Student, Carnegie Mellon University — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or mute the thread.

[luzh2]

Sounds good to me. Thanks! Zhiyong Lu

[DaveDeCaprio]

Approved. Use Dave DeCaprio

[AvantiShri]

Sure, Avanti Shrikumar. Thanks!

[XieConnect]

Sure and approved. Thanks! Wei Xie

[alexandari]

Approved. Amr Alexandari.

On Thu, Jun 14, 2018 at 12:21 PM, Wei Xie notifications@github.com wrote:

Sure and approved. Thanks! Wei Xie

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[bdo311]

Sure thanks!

[enricoferrero]

Sure. Enrico Ferrero. Thanks!

[zietzm]

Yes, Michael Zietz, thanks!

[gwaybio]

Yes please. Sorry for delay

[agapow]

Yup