greenelab / mpmp

Multimodal Pan-cancer Mutation Prediction
BSD 3-Clause "New" or "Revised" License
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Extend top/random gene sets to match size of merged gene set #81

Closed jjc2718 closed 2 years ago

jjc2718 commented 2 years ago

In #79, we changed most of the single-omics results from our paper to use a new, larger set of cancer genes formed by "merging" a few different gene sets (rather than just the Vogelstein et al. data we were looking at before).

This PR changes the numbers of top mutated/random genes to match the size of the new gene set. The results are still more or less the same, in the sense that choosing genes for their involvement in cancer still results in more well-performing classifiers than choosing genes by mutation frequency or randomly.

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