greenelab mpmp issues - Githubissues

greenelab / mpmp

Multimodal Pan-cancer Mutation Prediction

BSD 3-Clause "New" or "Revised" License

7 stars 6 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Add command line option for sample overlap to mutation prediction scripts

#43 jjc2718 closed 3 years ago
0
Gene set comparison + random gene selection

#42 jjc2718 closed 3 years ago
1
Check + diagnose multi-omics model fit

#41 jjc2718 closed 2 years ago
0
Match top mutated/random gene sets to size of Vogelstein dataset

#40 jjc2718 closed 3 years ago
0
Compare 8000 MAD features with all features for gene exp data

#39 jjc2718 opened 3 years ago
0
Multi-omics mutation prediction

#38 jjc2718 closed 3 years ago
0
Directory reorganization/cleanup

#37 jjc2718 closed 3 years ago
0
Probe type bias correction (and other preprocessing) for 27K methylation data

#36 jjc2718 closed 3 years ago
1
Filename parsing code

#35 jjc2718 opened 3 years ago
0
Tumor purity regression experiments

#34 jjc2718 closed 3 years ago
1
Sample overlap improvement/refactoring

#33 jjc2718 closed 3 years ago
0
Tumor purity prediction pilot study

#32 jjc2718 closed 3 years ago
1
Reindex in data model rather than in classification code?

#31 jjc2718 closed 3 years ago
1
Caching for cross-data sample set filtering

#30 jjc2718 closed 3 years ago
1
Add automated testing and other cleanup

#29 jjc2718 closed 3 years ago
0
Mutational signatures prediction analysis

#28 jjc2718 closed 3 years ago
2
Tests

#27 jjc2718 closed 3 years ago
0
Add sample overlap data types to model options

#26 jjc2718 closed 3 years ago
1
Restructure experiment order to make more sense

#25 jjc2718 closed 3 years ago
1
Add RPPA data to classification experiments

#24 jjc2718 closed 3 years ago
0
RPPA data preprocessing and sample analysis

#23 jjc2718 closed 3 years ago
0
Dimension reduction vs. performance

#22 jjc2718 opened 3 years ago
0
Classification experiments for 450K methylation data with raw features

#21 jjc2718 closed 3 years ago
1
Coefficient robustness, bimodality, etc.

#20 jjc2718 opened 3 years ago
0
PCA variance explained + elastic net nonzero feature distributions

#19 jjc2718 closed 3 years ago
4
Refactor code in compressed results notebook

#18 jjc2718 closed 3 years ago
0
Compressed classification/450K methylation pilot study

#17 jjc2718 closed 3 years ago
1
Look at cancer type of filtered samples in methylation data

#16 jjc2718 closed 3 years ago
0
Investigate effect of randomness on smaller PCs in 450K data

#15 jjc2718 closed 3 years ago
1
Process 450K methylation data and filter to overlapping samples

#14 jjc2718 closed 3 years ago
0
Subsample cancer type prediction data + cluster confusion matrices

#13 jjc2718 closed 3 years ago
0
Use Python f-strings instead of .format()

#12 jjc2718 opened 3 years ago
1
Clean up duplicated arguments in cancer type/mutation prediction scripts

#11 jjc2718 opened 3 years ago
2
Plot confusion matrix for cancer type prediction

#10 jjc2718 closed 3 years ago
1
Specify model options and save to experiment directory

#9 jjc2718 closed 3 years ago
0
Set up and run mutation classification for Vogelstein genes

#8 jjc2718 closed 3 years ago
3
Brainstorming ways to save parameters with output/results

#7 jjc2718 closed 3 years ago
1
Cancer type classification refactoring

#6 jjc2718 opened 3 years ago
0
Methylation NA row filtering

#5 jjc2718 closed 3 years ago
1
Set up and run cancer type classification pilot study

#4 jjc2718 closed 3 years ago
0
Combining data modalities

#3 jjc2718 closed 3 years ago
0
Gene expression/methylation data preprocessing and exploration

#2 jjc2718 closed 3 years ago
0
Initialize repo and add data download script

#1 jjc2718 closed 3 years ago
1