'PLIER' element in the list?

greenelab / multi-plier

An unsupervised transfer learning approach for rare disease transcriptomics

BSD 3-Clause "New" or "Revised" License

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'PLIER' element in the list? #69

Closed shbrief closed 4 years ago

shbrief commented 4 years ago

Hi! I'm trying to re-use functions from PLIER and multiPLIER for my study on extracting signatures from the public datasets, and have a question.

https://github.com/greenelab/multi-plier/blob/7c56a2867f9f08f7bcd3617875c7c2dbe886cbeb/32-explore_pathway_separation.Rmd#L259

Here, it seems like y is the loaded _PLIER_model.RDS file, but I don't think there is a PLIER element in the PLIER model output list. Could you direct me where this element is? Thanks!

shbrief commented 4 years ago

Sorry, I missed the comment on scripts/subsampling_PLIER.R.