greenelab netscape issues

greenelab / netscape

Exploring the network/pathway regularization landscape for gene expression data

BSD 3-Clause "New" or "Revised" License

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Make naming scheme in network regularization script more general

#21 jjc2718 opened 4 years ago
0
Network edge permutation experiments

#20 jjc2718 closed 4 years ago
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Compare stability of PyTorch vs. sklearn optimizers

#19 jjc2718 opened 4 years ago
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Convert learning curve functionality to use TensorBoard

#18 jjc2718 opened 4 years ago
1
Network regularization implementation + simulations

#17 jjc2718 closed 4 years ago
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Rename repository

#16 jjc2718 closed 4 years ago
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Clean up code duplication/redundancy

#15 jjc2718 closed 4 years ago
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Logistic regression (log-linear data) simulation experiments

#14 jjc2718 closed 4 years ago
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Use deterministic mode when running PyTorch models on GPU

#13 jjc2718 closed 4 years ago
1
PyTorch L1 regularization experiments

#12 jjc2718 closed 4 years ago
0
PyTorch logistic regression - implementation and comparison against scikit-learn

#11 jjc2718 closed 4 years ago
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Add classifier coefficient sparsity plot to downstream analysis script

#10 jjc2718 closed 5 years ago
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Unit tests for PLIER data model and symbol mapping script

#9 jjc2718 closed 5 years ago
0
Refactor data_models to generalize across methods/algorithms

#8 jjc2718 closed 4 years ago
2
Explore per-algorithm data transformation

#7 jjc2718 opened 5 years ago
0
Add analysis of weight matrix similarity/sparsity

#6 jjc2718 closed 5 years ago
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Think of a better/less generic project name

#5 jjc2718 closed 4 years ago
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Experiments with varying PLIER pathways dataset

#4 jjc2718 closed 5 years ago
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Integrating PLIER algorithm into mutation detection pipeline

#3 jjc2718 closed 5 years ago
1
Set up mutation prediction pipeline, round 2

#2 jjc2718 closed 5 years ago
0
Set up mutation prediction pipeline + reproduce BioBombe results

#1 jjc2718 closed 5 years ago
5