Subset gene features by MAD and clean up data preprocessing code

greenelab / pancancer-evaluation

Evaluating genome-wide prediction of driver mutations using pan-cancer data

BSD 3-Clause "New" or "Revised" License

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Closed jjc2718 closed 4 years ago

jjc2718 commented 4 years ago

This PR does the following:

Implements the preprocessing step of subsetting genes by mean absolute deviation (MAD) (closes #2)
Splits code for standardizing features and for filtering samples, previously this happened in the same function (closes #5)

See README.md for a description of the project. Happy to discuss/answer questions/add clarification if what I'm doing here is unclear.