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greenelab / pdx_exomeseq

Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
MIT License
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Redo visualizations with the concatenated final variants #32

Closed gwaybio closed 6 years ago

gwaybio commented 6 years ago

After concatenating and outputting variants, remake visualizations.

The replicate plots are also important, so make functions to output plots modular.

gwaybio commented 6 years ago

This will also require me to rethink read depth filtration - will need to update the high and low of filtration cut-offs. This also may need to be a dynamic filtration given the amount of reads per sample

gwaybio commented 6 years ago

This is partially addressed by #36