greenelab / pdx_exomeseq

Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
MIT License
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Update Oncoprint Data Processing #66

Closed gwaybio closed 6 years ago

gwaybio commented 6 years ago

Many files updated in this PR, but most important change is in 1d5555a. Here, I simplify the data curation into a single function. Another important update is a fix in bb878ad (change is probably easier viewed in 2e4fe24 - where I update the script numbering, which is now accurate).

The bulk of the changes happen after rerunning the pipeline. Nearly all of the files do not require review. To view the main figure updates, view the rich diff of the png files in 799c8da

Also closes #64