This PR stores the logic and infrastructure to run the human tissue samples through a human-only WES pipeline. Previously, all samples (including all patient derived xenografts) are run through the same pipeline, which aligns to both human and mouse, and then performs a disambiguation step.
Our collaborators were concerned with false positive variants creeping through into the human samples that failed to be filtered.
refs #67
This PR stores the logic and infrastructure to run the human tissue samples through a human-only WES pipeline. Previously, all samples (including all patient derived xenografts) are run through the same pipeline, which aligns to both human and mouse, and then performs a disambiguation step.
Our collaborators were concerned with false positive variants creeping through into the human samples that failed to be filtered.