greenelab / pdx_exomeseq

Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
MIT License
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Add human only plots #72

Closed gwaybio closed 5 years ago

gwaybio commented 5 years ago

There appear to be a lot of changes here, but there is really only one major change.

commit 0b8c597 adds a new analysis comparing human only variant calling with the disambiguation pipeline.

Another change includes several fixes to enable the human only pipeline processing and also a couple style updates (4be3110)

Nearly all of the files are changed after rerunning the entire analysis pipeline.