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greenelab / pubtator

Retrieve and process PubTator annotations
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This patch converts Pubtator to Pubtator Central #20

Closed danich1 closed 4 years ago

danich1 commented 4 years ago

Now that pubtator central is out this patch is designed to parse pubtator central's abstracts along with full text. Changes:

1 added map_ids.py which is a file designed to map pmids to pmcids

  1. added download_full_text.py which is a filed designed to download full text from pubtator central's api
  2. Updated examples to reflect the new changes
  3. Updated the execute.sh file to reflect new changes

Main files to review are the two added files and updated example files.