Z dimension parameter sweep visualization and results

greenelab / tybalt

Training and evaluating a variational autoencoder for pan-cancer gene expression data

BSD 3-Clause "New" or "Revised" License

162 stars 62 forks source link

Z dimension parameter sweep visualization and results #120

Closed gwaybio closed 6 years ago

gwaybio commented 6 years ago

Similar to #119 - here are several visualizations and a write up about these results. Probably best to track in z_dimensions_hyperparameter_sweep_results.md.

jaclyn-taroni commented 6 years ago

@gwaygenomics Can you make the palettes for your figures a bit more colorblind-friendly (see: https://github.com/clauswilke/colorblindr)? I probably should have brought this up in #119, too. I think the colors in the loss figures here are particularly important for interpretation.

gwaybio commented 6 years ago

Thanks @jaclyn-taroni - I've updated the color palette of this pull request. I will save updating the color palette of #119 for a later date (in discussing with @cgreene it actually may make sense for that to live in the CZI project repo)

I also addressed all other comments. thanks again!