Replace data in encoded_adage_features.tsv

greenelab / tybalt

Training and evaluating a variational autoencoder for pan-cancer gene expression data

BSD 3-Clause "New" or "Revised" License

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Replace data in encoded_adage_features.tsv #141

Closed arielah closed 5 years ago

arielah commented 5 years ago

The file (encoded_adage_features.tsv) as stored on git is only three lines. tsne_tybalt_features.ipynb expects a true tsv file and throws a value error. I ran adage_training.ipynb on my machine and it made a working copy of the file.

arielah commented 5 years ago

I figured out what was going on here. I didn't have git-lfs installed on my computer, so instead of downloading the file when I cloned, it just left a pointer to the data. Nothing's wrong with the actual data. Depending on how obvious this solution is, maybe include a note for the uninitiated about needing git-lfs or the downstream jupyter notebooks will get upset.