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greenelab / tybalt

Training and evaluating a variational autoencoder for pan-cancer gene expression data
BSD 3-Clause "New" or "Revised" License
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Add Pathway Analysis Script #68

Closed gwaybio closed 6 years ago

gwaybio commented 6 years ago

This PR adds a pathway analysis script that performs overrepresentation pathway analyses for the hgsc and skcm associated nodes' high weight genes extracted from #67.

There are two parts to this PR:

  1. The pathway analysis script (commit 0f90680)
  2. The autogenerated results of the pathway analysis for hgsc (commit ee33df2) and skcm (commit b44c56e)

Probably only worth reviewing the pathway analysis script for content.

gwaybio commented 6 years ago

Thanks @jaclyn-taroni and @danich1 - I believe the most recent commit f35e9b8 and my specific in-line responses address your comments. Ready again for review!