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greenelab / tybalt

Training and evaluating a variational autoencoder for pan-cancer gene expression data
BSD 3-Clause "New" or "Revised" License
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Add reconstruction based analysis #89

Closed gwaybio closed 6 years ago

gwaybio commented 6 years ago

I need to perform a dimesionality reduction algorithm analysis of reconstruction costs. I will slowly increase the number of latent space features and observe how this relates to reconstruction cost for several algorithms.

This is much easier to do for PCA, ICA, and NMF. It will require a substantial refactoring of tybalt (see #74) and adage in order to facilitate these keras based models

stale[bot] commented 6 years ago

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