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greener98103 / rna-star

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Unmapped fastq empty if using --runThreadN #13

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
On several occasions it happens that the Unmapped reads are not transferred 
from the _tmp folder to the main file but just get deleted or so it seems? 
(Unmapped file is empty).

If i run the software with no threading, everything is fine.

Aligned reads are reported in both cases without problems.

Original issue reported on code.google.com by gregor....@gmail.com on 22 Jan 2014 at 12:16

GoogleCodeExporter commented 9 years ago 
Please post your questions in the STAR forum 
https://groups.google.com/d/forum/rna-star for a faster reply.
Please try the latest patch of STAR: 
ftp://ftp2.cshl.edu/gingeraslab/tracks/STARrelease/Alpha/STAR_2.3.1z.tgz, this 
problem could have been fixed already.

Original comment by adobin@gmail.com on 25 Feb 2014 at 10:31

GoogleCodeExporter commented 9 years ago 
I'm having the same issue. Happy to hear the remedy (no threading).

Original comment by jaarrib...@gmail.com on 26 Jul 2014 at 12:12