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gregmedlock / asf_interactions

Detection of growth- and metabolism-altering interactions within a defined microbiota
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Generate volcano plots and summary metrics for CRAM model #6

Closed gregmedlock closed 6 years ago

gregmedlock commented 6 years ago

Transfer over the plotting scripts for CRAM results into a new notebook and decide on which figures will go into figure 3 for the manuscript. Standardize the CRAM output and count metabolites categorically based on the monoculture differential abundance results (e.g. consumed by one species, produced by one species, etc.).

gregmedlock commented 6 years ago

Formalize the comparison of positive interaction volcano metrics to the overall population (also try the rest of the population, e.g. without the positive interaction pairs included)