gregpoore / tcga_rebuttal

Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
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Cross validation: Each sample or set left out once? #2

Closed corneliusroemer closed 1 year ago

corneliusroemer commented 1 year ago

I wasn't quite sure whether I understood this sentence correctly:

Gradient boosting machines were applied with 10-fold cross-validation such that every sample was left out once.

If I understand it correclty, you split all samples into ten sets, and leave each set out once, not each sample.

The sentence above appears twice, in captions 1F and 2A.

gregpoore commented 1 year ago

@corneliusroemer

Sorry for the confusion. Both are correct, but my wording was not the clearest:

Thanks for question!