pletzer
commented
9 years ago Hi Greg,
Please update galaxy-csg. Let me know if the change did not fix the issue. Thanks.
--Alex
On Tue, Oct 13, 2015 at 6:31 AM, Greg Von Kuster notifications@github.com wrote:
This change seems to have broken the add_surface_field_from_expression tool: d24e0c0 https://github.com/gregvonkuster/galaxy-csg/commit/d24e0c06d92b1a60bf7a7a30c80f5c11cffa2f42
Using the attached file as the input (the file is a vtk data file but I had to change the extension to allow it to be uploaded here) box.txt https://github.com/gregvonkuster/galaxy-csg/files/12444/box.txt dataset along with these parameter values:
field_name: surface_field expression: (x_2 * sin(y_pi) + z4) \ exp(t) time_point: 0.1
produces the following output:
/Users/gvk/work/ts_install/tool_dependency_dir/icqsol/latest/iuc/package_icqsol_latest/2e903d73018b/lib/python2.7/site-packages/icqsol/shapes/icqRefineSurface.py:91: RuntimeWarning: divide by zero encountered in double_scalars numSegs = int(max(1, math.ceil(edgeLength/max_edge_length))) Traceback (most recent call last): File "/Users/gvk/work/ts_install/shed_tools/localhost/repos/iuc/icqsol_add_surface_field_from_expression/cc17f560a6e7/icqsol_add_surface_field_from_expression/icqsol_add_surface_field_from_expression.py", line 40, in args.max_edge_length) File "/Users/gvk/work/ts_install/tool_dependency_dir/icqsol/latest/iuc/package_icqsol_latest/2e903d73018b/lib/python2.7/site-packages/icqsol/shapes/icqShapeManager.py", line 143, in addSurfaceFieldFromExpressionToShape max_edge_length=max_edge_length) File "/Users/gvk/work/ts_install/tool_dependency_dir/icqsol/latest/iuc/package_icqsol_latest/2e903d73018b/lib/python2.7/site-packages/icqsol/shapes/icqShapeManager.py", line 249, in refineVtkPolyData rs.refine(max_edge_length=max_edge_length) File "/Users/gvk/work/ts_install/tool_dependency_dir/icqsol/latest/iuc/package_icqsol_latest/2e903d73018b/lib/python2.7/site-packages/icqsol/shapes/icqRefineSurface.py", line 91, in refine numSegs = int(max(1, math.ceil(edgeLength/max_edge_length))) OverflowError: cannot convert float infinity to integer
— Reply to this email directly or view it on GitHub https://github.com/gregvonkuster/galaxy-csg/issues/7.
Alexander Pletzer +1 609 799 7999 cell alexander@gokliya.net
gregvonkuster
@pletzer This change seems to have broken the add_surface_field_from_expression tool: https://github.com/gregvonkuster/galaxy-csg/commit/d24e0c06d92b1a60bf7a7a30c80f5c11cffa2f42
Using the attached file as the input (the file is a vtk data file but I had to change the extension to allow it to be uploaded here) box.txt dataset along with these parameter values:
field_name: surface_field expression: (x2 * sin(y*pi) + z4) * exp(t) time_point: 0.1
produces the following output:
/Users/gvk/work/ts_install/tool_dependency_dir/icqsol/latest/iuc/package_icqsol_latest/2e903d73018b/lib/python2.7/site-packages/icqsol/shapes/icqRefineSurface.py:91: RuntimeWarning: divide by zero encountered in double_scalars numSegs = int(max(1, math.ceil(edgeLength/max_edge_length))) Traceback (most recent call last): File "/Users/gvk/work/ts_install/shed_tools/localhost/repos/iuc/icqsol_add_surface_field_from_expression/cc17f560a6e7/icqsol_add_surface_field_from_expression/icqsol_add_surface_field_from_expression.py", line 40, in
args.max_edge_length)
File "/Users/gvk/work/ts_install/tool_dependency_dir/icqsol/latest/iuc/package_icqsol_latest/2e903d73018b/lib/python2.7/site-packages/icqsol/shapes/icqShapeManager.py", line 143, in addSurfaceFieldFromExpressionToShape
max_edge_length=max_edge_length)
File "/Users/gvk/work/ts_install/tool_dependency_dir/icqsol/latest/iuc/package_icqsol_latest/2e903d73018b/lib/python2.7/site-packages/icqsol/shapes/icqShapeManager.py", line 249, in refineVtkPolyData
rs.refine(max_edge_length=max_edge_length)
File "/Users/gvk/work/ts_install/tool_dependency_dir/icqsol/latest/iuc/package_icqsol_latest/2e903d73018b/lib/python2.7/site-packages/icqsol/shapes/icqRefineSurface.py", line 91, in refine
numSegs = int(max(1, math.ceil(edgeLength/max_edge_length)))
OverflowError: cannot convert float infinity to integer