grenaud / SAFARI

Sensitive Alignments from a RYmer Index
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Installation fails on Redhat Enterprise 9.4 #1

Open rattei opened 2 weeks ago

rattei commented 2 weeks ago

Hello,

installation of SAFARI according to the docs: git clone --recursive https://github.com/grenaud/SAFARI && cd SAFARI && ./source_me.sh && make -j 8 || true && make clean && make -j 8

fails on RHEL 9.4 with this error: .... CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /home/projects2/vgan_ancient/THIRD_VERSION/SAFARI/deps/sparsehash/missing aclocal-1.16 -I m4 /bin/bash: /home/projects2/vgan_ancient/THIRD_VERSION/SAFARI/deps/sparsehash/missing: No such file or directory

The error message indicates a hard-coded path "/home/projects2/", which does not exist on our system. Can this please be corrected? Thanks!

Best, Thomas

JoshuaDanielRubin commented 2 weeks ago

Hi Thomas,

Apologies, I tested this on the same machine that I compiled on so I didn't catch this - I will work on it, in the meantime I hope the static binary works for you.

Best, Josh

rattei commented 2 weeks ago

Indeed, the static binary seems to work on RHEL 9.4. We can run the example from the readme (although, initially it was confusing that the example needs the SAFARI clone from GitHub, including its test folder, and additionally the SAFARI_graph as separate download).

Best, Thomas