grenaud / gargammel

gargammel is an ancient DNA simulator
GNU General Public License v3.0
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Fix FASTA headers in Simulated Genomes (msprime) #10

Closed jch-13 closed 4 years ago

jch-13 commented 4 years ago

This fixes the The endogenous directory must have 2 fai files, with the same chromosomes, one has ancient_1 while the other has ancient_2 error message and the creation of a ref.fa that only contained

>ref_1
>REFERENCE_2

when using msprime_chromosomes.py.

grenaud commented 4 years ago

Danke Christian!