grenaud / gargammel

gargammel is an ancient DNA simulator
GNU General Public License v3.0
26 stars 15 forks source link

Added a chromosome generation script that uses msprime instead of ms #5

Closed Jazpy closed 6 years ago

Jazpy commented 6 years ago

script should be run in the following way:

python3 msprime_chromosomes.py [-h] --gens GENS --bases BASES [--split [SPLIT]]

Where:

The script is intended to emulate ms2chromosomes.py output, but it can be easily modified to incorporate more samples and other demographic events.

grenaud commented 6 years ago

thank you to Jazeps Medina Tretmanis for this contribution.