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grenaud / glactools

command-line tools for the management of genotype likelihoods and allele counts
http://grenaud.github.io/glactools/
GNU General Public License v3.0
28 stars 2 forks source link

Dev #1

Closed grenaud closed 6 years ago

codecov-io commented 6 years ago

Codecov Report

Merging #1 into master will increase coverage by 0.6%. The diff coverage is 82.65%.

Impacted file tree graph

@@            Coverage Diff            @@
##           master       #1     +/-   ##
=========================================
+ Coverage   38.56%   39.16%   +0.6%     
=========================================
  Files          85       85             
  Lines        7502     7603    +101     
  Branches     1971     2009     +38     
=========================================
+ Hits         2893     2978     +85     
- Misses       3651     3663     +12     
- Partials      958      962      +4
Impacted Files Coverage Δ
CoreVCF.h 60% <ø> (ø) :arrow_up:
SimpleVCF.h 100% <ø> (ø) :arrow_up:
ReadTabix.cpp 31.81% <100%> (+6.81%) :arrow_up:
SimpleVCF.cpp 37.33% <61.53%> (+0.54%) :arrow_up:
MultiVCFreader.cpp 50.41% <71.42%> (+4.82%) :arrow_up:
VcfMulti2ACF.cpp 51.76% <86.66%> (+4.02%) :arrow_up:
EIGENSTRAT2ACF.cpp 53.8% <87.5%> (+3.29%) :arrow_up:
CoreVCF.cpp 70.4% <97.36%> (+7.58%) :arrow_up:
GlacNoSharing.cpp 46.84% <0%> (-0.91%) :arrow_down:
GlacSharing.cpp 47.82% <0%> (-0.87%) :arrow_down:
... and 2 more

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grenaud commented 6 years ago

Uses kstring, seems faster