Hello Gabriel,
Here is the compilation output I get when I tried to compile on Mac Mojave v. 10.14.4
Peter
uhtred:glactools-master bgppermp$ make
rm -rf bamtools/
git clone --recursive https://github.com/pezmaster31/bamtools.git
Cloning into 'bamtools'...
remote: Enumerating objects: 4857, done.
remote: Total 4857 (delta 0), reused 0 (delta 0), pack-reused 4857
Receiving objects: 100% (4857/4857), 6.06 MiB | 8.05 MiB/s, done.
Resolving deltas: 100% (3373/3373), done.
cd bamtools/ && mkdir -p build/ && cd build/ && cmake .. && make && cd ../..
-- The CXX compiler identification is AppleClang 10.0.1.10010046
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:20 (cmake_policy):
The OLD behavior for policy CMP0042 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Found PkgConfig: /usr/local/bin/pkg-config (found version "0.29.2")
-- Checking for one of the modules 'jsoncpp>=1'
Did NOT find system JsonCpp, instead using bundled version
-- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.11")
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/bgppermp/Downloads/glactools-master/bamtools/build
Scanning dependencies of target SharedHeaders
[ 0%] Built target SharedHeaders
Scanning dependencies of target APIHeaders
[ 0%] Built target APIHeaders
Scanning dependencies of target AlgorithmsHeaders
[ 0%] Built target AlgorithmsHeaders
Scanning dependencies of target BamTools
[ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
[ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
[ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
[ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
[ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
[ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
[ 11%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
[ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
[ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
[ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
[ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
[ 19%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
[ 21%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
[ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
[ 24%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
[ 26%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
[ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
[ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
[ 31%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
[ 32%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
[ 34%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
[ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
[ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
[ 39%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
[ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
[ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
[ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
[ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
[ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
[ 49%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
[ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
[ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
[ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
[ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
[ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
[ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
[ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
[ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
[ 63%] Linking CXX static library libbamtools.a
[ 63%] Built target BamTools
Scanning dependencies of target jsoncpp
[ 65%] Building CXX object src/third_party/jsoncpp/CMakeFiles/jsoncpp.dir/jsoncpp.cpp.o
[ 67%] Linking CXX static library libjsoncpp.a
[ 67%] Built target jsoncpp
Scanning dependencies of target BamTools-utils
[ 68%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o
[ 70%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o
[ 72%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o
[ 73%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
[ 75%] Linking CXX static library libbamtools-utils.a
[ 75%] Built target BamTools-utils
Scanning dependencies of target bamtools_cmd
[ 77%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o
[ 78%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
[ 80%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
[ 81%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o
[ 83%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
[ 85%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
[ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
[ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
[ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
[ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
[ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o
[ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o
[ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o
[100%] Linking CXX executable bamtools
[100%] Built target bamtools_cmd
rm -rf htslib/
git clone --recursive https://github.com/samtools/htslib.git
Cloning into 'htslib'...
remote: Enumerating objects: 10, done.
remote: Counting objects: 100% (10/10), done.
remote: Compressing objects: 100% (10/10), done.
remote: Total 11614 (delta 1), reused 3 (delta 0), pack-reused 11604
Receiving objects: 100% (11614/11614), 8.50 MiB | 6.15 MiB/s, done.
Resolving deltas: 100% (8214/8214), done.
cd htslib/ && make && cd ../
echo '/ Default config.h generated by Makefile /' > config.h
echo '#define HAVE_LIBBZ2 1' >> config.h
echo '#define HAVE_LIBLZMA 1' >> config.h
echo '#define HAVE_LZMA_H 1' >> config.h
echo '#define HAVE_FSEEKO 1' >> config.h
echo '#define HAVE_DRAND48 1' >> config.h
echo '#define HAVE_LIBCURL 1' >> config.h
gcc -g -Wall -O2 -I. -c -o kfunc.o kfunc.c
gcc -g -Wall -O2 -I. -c -o knetfile.o knetfile.c
gcc -g -Wall -O2 -I. -c -o kstring.o kstring.c
gcc -g -Wall -O2 -I. -c -o bcf_sr_sort.o bcf_sr_sort.c
gcc -g -Wall -O2 -I. -c -o bgzf.o bgzf.c
gcc -g -Wall -O2 -I. -c -o errmod.o errmod.c
gcc -g -Wall -O2 -I. -c -o faidx.o faidx.c
gcc -g -Wall -O2 -I. -c -o header.o header.c
gcc -g -Wall -O2 -I. -c -o hfile.o hfile.c
gcc -g -Wall -O2 -I. -c -o hfile_net.o hfile_net.c
echo '#define HTS_VERSION "1.9-288-g830c061"' > version.h
gcc -g -Wall -O2 -I. -c -o hts.o hts.c
gcc -g -Wall -O2 -I. -c -o hts_os.o hts_os.c
gcc -g -Wall -O2 -I. -c -o md5.o md5.c
gcc -g -Wall -O2 -I. -c -o multipart.o multipart.c
gcc -g -Wall -O2 -I. -c -o probaln.o probaln.c
gcc -g -Wall -O2 -I. -c -o realn.o realn.c
gcc -g -Wall -O2 -I. -c -o regidx.o regidx.c
gcc -g -Wall -O2 -I. -c -o region.o region.c
gcc -g -Wall -O2 -I. -c -o sam.o sam.c
gcc -g -Wall -O2 -I. -c -o synced_bcf_reader.o synced_bcf_reader.c
gcc -g -Wall -O2 -I. -c -o vcf_sweep.o vcf_sweep.c
gcc -g -Wall -O2 -I. -c -o tbx.o tbx.c
gcc -g -Wall -O2 -I. -c -o textutils.o textutils.c
gcc -g -Wall -O2 -I. -c -o thread_pool.o thread_pool.c
gcc -g -Wall -O2 -I. -c -o vcf.o vcf.c
gcc -g -Wall -O2 -I. -c -o vcfutils.o vcfutils.c
gcc -g -Wall -O2 -I. -c -o cram/cram_codecs.o cram/cram_codecs.c
gcc -g -Wall -O2 -I. -c -o cram/cram_decode.o cram/cram_decode.c
gcc -g -Wall -O2 -I. -c -o cram/cram_encode.o cram/cram_encode.c
gcc -g -Wall -O2 -I. -c -o cram/cram_external.o cram/cram_external.c
gcc -g -Wall -O2 -I. -c -o cram/cram_index.o cram/cram_index.c
gcc -g -Wall -O2 -I. -c -o cram/cram_io.o cram/cram_io.c
gcc -g -Wall -O2 -I. -c -o cram/cram_samtools.o cram/cram_samtools.c
gcc -g -Wall -O2 -I. -c -o cram/cram_stats.o cram/cram_stats.c
gcc -g -Wall -O2 -I. -c -o cram/mFILE.o cram/mFILE.c
gcc -g -Wall -O2 -I. -c -o cram/open_trace_file.o cram/open_trace_file.c
gcc -g -Wall -O2 -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c
gcc -g -Wall -O2 -I. -c -o cram/rANS_static.o cram/rANS_static.c
gcc -g -Wall -O2 -I. -c -o cram/string_alloc.o cram/string_alloc.c
gcc -g -Wall -O2 -I. -c -o hfile_libcurl.o hfile_libcurl.c
ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/string_alloc.o hfile_libcurl.o
ranlib libhts.a
gcc -dynamiclib -install_name /usr/local/lib/libhts.2to3part10.dylib -current_version 1.9.255 -compatibility_version 2.10 -o libhts.dylib kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/string_alloc.o hfile_libcurl.o -lz -lm -lbz2 -llzma -lcurl
ln -sf libhts.dylib libhts.2to3part10.dylib
gcc -g -Wall -O2 -I. -c -o bgzip.o bgzip.c
gcc -o bgzip bgzip.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o htsfile.o htsfile.c
gcc -o htsfile htsfile.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o tabix.o tabix.c
gcc -o tabix tabix.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/hts_endian.o test/hts_endian.c
gcc -o test/hts_endian test/hts_endian.o -lz -lm -lbz2 -llzma -lcurl
gcc -g -Wall -O2 -I. -c -o test/fieldarith.o test/fieldarith.c
gcc -o test/fieldarith test/fieldarith.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/hfile.o test/hfile.c
gcc -o test/hfile test/hfile.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/pileup.o test/pileup.c
gcc -o test/pileup test/pileup.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/sam.o test/sam.c
gcc -o test/sam test/sam.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test_bgzf.o test/test_bgzf.c
gcc -o test/test_bgzf test/test_bgzf.o libhts.a -lz -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test_kstring.o test/test_kstring.c
gcc -o test/test_kstring test/test_kstring.o libhts.a -lz -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test_realn.o test/test_realn.c
gcc -o test/test_realn test/test_realn.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test-regidx.o test/test-regidx.c
gcc -o test/test-regidx test/test-regidx.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test_view.o test/test_view.c
gcc -o test/test_view test/test_view.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test_index.o test/test_index.c
gcc -o test/test_index test/test_index.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test-vcf-api.o test/test-vcf-api.c
gcc -o test/test-vcf-api test/test-vcf-api.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c
gcc -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test-bcf-sr.o test/test-bcf-sr.c
gcc -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c
gcc -g -Wall -O2 -I. -c -o test/test-bcf-translate.o test/test-bcf-translate.c
gcc -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -lz -lm -lbz2 -llzma -lcurl -lpthread
gcc -g -Wall -O2 -I. -c -o test/test-parse-reg.o test/test-parse-reg.c
gcc -o test/test-parse-reg test/test-parse-reg.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread
rm -rf libgab/
git clone --recursive https://github.com/grenaud/libgab.git
Cloning into 'libgab'...
remote: Enumerating objects: 300, done.
remote: Total 300 (delta 0), reused 0 (delta 0), pack-reused 300
Receiving objects: 100% (300/300), 114.47 KiB | 626.00 KiB/s, done.
Resolving deltas: 100% (187/187), done.
make -C libgab
g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c utils.cpp -o utils.o
g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c testUtils.cpp -o testUtils.o
testUtils.cpp: In function ‘int main(int, char*)’:
testUtils.cpp:22:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
for(unsigned int c= 2147400000;c<10147400000;c+=1000000)
^~~
testUtils.cpp:24:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
return 0;
^~
make -C gzstream/
g++ -I. -O -c -o gzstream.o gzstream.C
ar cr libgzstream.a gzstream.o
g++ -o testUtils testUtils.o utils.o gzstream/libgzstream.a -lz
g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c ReconsReferenceBAM.cpp -o ReconsReferenceBAM.o
g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c PutProgramInHeader.cpp -o PutProgramInHeader.o
g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c FastQObj.cpp -o FastQObj.o
g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c FastQParser.cpp -o FastQParser.o
g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c testRecons.cpp -o testRecons.o
g++ -o testRecons testRecons.o utils.o /Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/libbamtools.a ReconsReferenceBAM.o gzstream/libgzstream.a -lz
Undefined symbols for architecture x86_64:
"BamTools::BamReader::Open(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)", referenced from:
_main in testRecons.o
"BamTools::BamAlignment::FindTag(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&, char&, unsigned int const&, unsigned int&) const", referenced from:
reconstructRefWithPosOnRead[abi:cxx11](BamTools::BamAlignment const) in ReconsReferenceBAM.o
reconstructRefWithPos[abi:cxx11](BamTools::BamAlignment const) in ReconsReferenceBAM.o
"std::1::basic_string<char, std::__1::char_traits, std::1::allocator >::at(unsigned long) const", referenced from:
BamTools::Internal::SamHeaderValidator::CheckNameFormat(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::SamHeaderValidator::CheckSequencingTechnology(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::HttpRequestHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
"std::1::basic_string<char, std::__1::char_traits, std::1::allocator >::find(char, unsigned long) const", referenced from:
BamTools::Internal::SamHeaderValidator::ValidateVersion() in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::BamFtp::ParseUrl(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(BamFtp_p.cpp.o)
BamTools::Internal::BamFtp::ParsePassiveResponse() in libbamtools.a(BamFtp_p.cpp.o)
BamTools::Internal::BamHttp::ParseUrl(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(BamHttp_p.cpp.o)
BamTools::Internal::HttpHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
BamTools::Internal::HttpRequestHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
BamTools::Internal::HttpResponseHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
...
"std::1::basic_string<char, std::__1::char_traits, std::1::allocator >::rfind(char, unsigned long) const", referenced from:
BamTools::Internal::BamIndexFactory::CreateIndexFromFilename(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, BamTools::Internal::BamReaderPrivate) in libbamtools.a(BamIndexFactory_p.cpp.o)
BamTools::Internal::BamIndexFactory::FileExtension(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(BamIndexFactory_p.cpp.o)
BamTools::Internal::HostAddress::ParseAddress() in libbamtools.a(HostAddress_p.cpp.o)
"std::1::basic_string<char, std::__1::char_traits, std::1::allocator >::compare(unsigned long, unsigned long, char const, unsigned long) const", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamDeviceFactory::CreateDevice(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(BamDeviceFactory_p.cpp.o)
"std::1::vector_base_common::throw_length_error() const", referenced from:
BamTools::BamAlignment::BamAlignment(BamTools::BamAlignment const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::BamAlignment::GetSoftClips(std::1::vector<int, std::1::allocator >&, std::1::vector<int, std::1::allocator >&, std::1::vector<int, std::1::allocator >&, bool) const in libbamtools.a(BamAlignment.cpp.o)
void std::1::vector<std::1::basic_string<char, std::__1::char_traits, std::1::allocator >, std::1::allocator<std::1::basic_string<char, std::1::char_traits, std::1::allocator > > >::push_back_slow_path<std::1::basic_string<char, std::1::char_traits, std::1::allocator > const>(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::LoadNextAlignment(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o)
void std::1::vector<std::1::basic_string<char, std::1::char_traits, std::1::allocator >, std::1::allocator<std::1::basic_string<char, std::__1::char_traits, std::1::allocator > > >::push_back_slow_path<std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const>(std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
void std::1::vector<BamTools::RefData, std::1::allocator >::push_back_slow_path(BamTools::RefData const&) in libbamtools.a(BamReader_p.cpp.o)
std::1::vector<BamTools::CustomHeaderTag, std::1::allocator >::vector(std::1::vector<BamTools::CustomHeaderTag, std::1::allocator > const&) in libbamtools.a(SamHeader.cpp.o)
...
"std::1::vector_base_common::throw_out_of_range() const", referenced from:
BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamSequenceDictionary::Remove(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamSequenceDictionary.cpp.o)
BamTools::SamSequenceDictionary::operator[](std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamSequenceDictionary.cpp.o)
BamTools::SamReadGroupDictionary::Remove(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamReadGroupDictionary.cpp.o)
BamTools::SamReadGroupDictionary::operator[](std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamReadGroupDictionary.cpp.o)
BamTools::Internal::BamToolsIndex::ReadReferenceEntry(BamTools::Internal::BtiReferenceEntry&) in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamToolsIndex::HasAlignments(int const&) const in libbamtools.a(BamToolsIndex_p.cpp.o)
...
"std::1::basic_string_common::throw_length_error() const", referenced from:
std::1::basic_string<char, std::__1::char_traits, std::1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, char) in libbamtools.a(BamAlignment.cpp.o)
std::1::basic_string<char, std::1::char_traits, std::1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::Close() in libbamtools.a(BamReader_p.cpp.o)
std::1::basic_string<char, std::1::char_traits, std::1::allocator > std::1::operator+<char, std::__1::char_traits, std::1::allocator >(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::GetNextAlignmentCore(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::LoadReferenceData() in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::Open(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
...
"std::1::locale::use_facet(std::1::locale::id&) const", referenced from:
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >::operator<<(std::1::basic_ostream<char, std::1::char_traits >& (*)(std::__1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::__1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::ios_base::getloc() const", referenced from:
std::__1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std::1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
std::__1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::basic_string<char, std::__1::char_traits, std::1::allocator >::at(unsigned long)", referenced from:
BamTools::Internal::HttpResponseHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
"std::1::basic_string<char, std::__1::char_traits, std::1::allocator >::append(char const, unsigned long)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
std::1::basic_string<char, std::__1::char_traits, std::1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
std::1::basic_string<char, std::1::char_traits, std::1::allocator > std::1::operator+<char, std::__1::char_traits, std::1::allocator >(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::Tag2Cigar(BamTools::BamAlignment&, BamTools::RaiiBuffer&) in libbamtools.a(BamReader_p.cpp.o)
std::1::basic_string<char, std::__1::char_traits, std::1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std::1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, char const) in libbamtools.a(BamReader_p.cpp.o)
std::1::basic_string<char, std::__1::char_traits, std::1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(BgzfStream_p.cpp.o)
std::__1::basic_string<char, std::1::char_traits, std::1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
...
"std::1::basic_string<char, std::1::char_traits, std::1::allocator >::append(unsigned long, char)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
"std::1::basic_string<char, std::1::char_traits, std::1::allocator >::assign(char const*)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
BamTools::SamHeader::SetHeaderText(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamHeader.cpp.o)
BamTools::Internal::BamToolsIndex::Create() in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamToolsIndex::Jump(BamTools::BamRegion const&, bool*) in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamToolsIndex::Load(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::Jump(BamTools::BamRegion const&, bool*) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::__1::basic_string<char, std::1::char_traits, std::1::allocator >::assign(char const*, unsigned long)", referenced from:
BamTools::BamAlignment::RemoveTag(std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::LoadNextAlignment(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o)
"std::1::basic_string<char, std::1::char_traits, std::1::allocator >::resize(unsigned long, char)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(BgzfStream_p.cpp.o)
std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(SamHeader.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator >::overflow(int) in libbamtools.a(SamFormatParser_p.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::str(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::__1::basic_string<char, std::1::char_traits, std::1::allocator >::reserve(unsigned long)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::Tag2Cigar(BamTools::BamAlignment&, BamTools::RaiiBuffer&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamHttp::ParseUrl(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(BamHttp_p.cpp.o)
"std::__1::basic_string<char, std::1::char_traits, std::1::allocator >::push_back(char)", referenced from:
std::__1::basic_string<char, std::1::char_traits, std::1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, char) in libbamtools.a(BamAlignment.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator >::overflow(int) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator >::overflow(int) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(SamHeader.cpp.o)
std::1::basic_istream<char, std::1::char_traits >& std::1::getline<char, std::1::char_traits, std::1::allocator >(std::1::basic_istream<char, std::1::char_traits >&, std::__1::basic_string<char, std::1::char_traits, std::1::allocator >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(SamFormatParser_p.cpp.o)
std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::__1::basic_string<char, std::1::char_traits, std::1::allocator >::basic_string(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&)", referenced from:
BamTools::BamAlignment::BamAlignment(BamTools::BamAlignment const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::BamAlignment::GetErrorString() const in libbamtools.a(BamAlignment.cpp.o)
BamTools::BamAlignment::GetTagNames() const in libbamtools.a(BamAlignment.cpp.o)
void std::1::vector<std::1::basic_string<char, std::__1::char_traits, std::1::allocator >, std::1::allocator<std::1::basic_string<char, std::1::char_traits, std::1::allocator > > >::push_back_slow_path<std::1::basic_string<char, std::1::char_traits, std::1::allocator > const>(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::Filename() const in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::GetErrorString() const in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::GetReferenceID(std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) const in libbamtools.a(BamReader_p.cpp.o)
...
"std::1::basic_string<char, std::1::char_traits, std::__1::allocator >::basic_string(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, unsigned long, unsigned long, std::1::allocator const&)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamIndexFactory::CreateIndexFromFilename(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&, BamTools::Internal::BamReaderPrivate*) in libbamtools.a(BamIndexFactory_p.cpp.o)
BamTools::Internal::BamIndexFactory::FileExtension(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(BamIndexFactory_p.cpp.o)
BamTools::Internal::SamFormatParser::ParseSamLine(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::ParseHDLine(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::ParseSQLine(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::ParseRGLine(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
...
"std::__1::basic_string<char, std::1::char_traits, std::1::allocator >::~basic_string()", referenced from:
BamTools::BamAlignment::SetErrorString(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) const in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::SetErrorString(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
GLOBALsub_I_BamException_p.cpp in libbamtools.a(BamException_p.cpp.o)
GLOBALsub_I_SamHeader.cpp in libbamtools.a(SamHeader.cpp.o)
GLOBALsub_I_BamToolsIndex_p.cpp in libbamtools.a(BamToolsIndex_p.cpp.o)
GLOBALsub_I_SamFormatParser_p.cpp in libbamtools.a(SamFormatParser_p.cpp.o)
GLOBALsub_I_BamStandardIndex_p.cpp in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::basic_string<char, std::1::char_traits, std::1::allocator >::operator=(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&)", referenced from:
BamTools::BamAlignment::SetErrorString(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) const in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::SetErrorString(std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::GetNextAlignment(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::LoadReferenceData() in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::Open(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamRandomAccessController::SetErrorString(std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::Internal::BamIndexFactory::FindIndexFilename(std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamIndexFactory_p.cpp.o)
...
"std::1::basic_istream<char, std::1::char_traits >::sentry::sentry(std::__1::basic_istream<char, std::1::char_traits >&, bool)", referenced from:
std::1::basic_istream<char, std::__1::char_traits >& std::1::getline<char, std::1::char_traits, std::1::allocator >(std::1::basic_istream<char, std::1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std::1::allocator >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
std::1::basic_istream<char, std::__1::char_traits >& std::1::getline<char, std::1::char_traits, std::1::allocator >(std::1::basic_istream<char, std::1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std::1::allocator >&, char) in libbamtools.a(BamFtp_p.cpp.o)
std::1::basic_istream<char, std::__1::char_traits >& std::1::getline<char, std::1::char_traits, std::1::allocator >(std::1::basic_istream<char, std::1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std::1::allocator >&, char) in libbamtools.a(HttpHeader_p.cpp.o)
std::1::basic_istream<char, std::__1::char_traits >& std::1::getline<char, std::1::char_traits, std::1::allocator >(std::1::basic_istream<char, std::1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std::1::allocator >&, char) in libbamtools.a(HostAddress_p.cpp.o)
"std::1::basic_istream<char, std::1::char_traits >::~basic_istream()", referenced from:
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_istringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"std::__1::basic_istream<char, std::1::char_traits >::~basic_istream()", referenced from:
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_istringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"std::1::basic_istream<char, std::1::char_traits >::~basic_istream()", referenced from:
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
std::1::basic_istringstream<char, std::1::char_traits, std::1::allocator >::~basic_istringstream() in libbamtools.a(SamFormatParser_p.cpp.o)
"std::1::basic_istream<char, std::1::char_traits >::operator>>(unsigned int&)", referenced from:
BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
"std::1::basic_istream<char, std::__1::char_traits >::operator>>(unsigned short&)", referenced from:
BamTools::Internal::TcpSocket::ConnectImpl(BamTools::Internal::HostInfo const&, std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&, BamTools::IBamIODevice::OpenMode) in libbamtools.a(TcpSocket_p.cpp.o)
"std::1::basic_ostream<char, std::1::char_traits >::put(char)", referenced from:
std::__1::basic_ostream<char, std::1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std::1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintHD(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintSQ(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintRG(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintPG(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintCO(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"std::1::basic_ostream<char, std::1::char_traits >::flush()", referenced from:
std::__1::basic_ostream<char, std::1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std::1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintHD(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintSQ(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintRG(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintPG(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintCO(std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"std::1::basic_ostream<char, std::1::char_traits >::sentry::sentry(std::__1::basic_ostream<char, std::1::char_traits >&)", referenced from:
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamHttp_p.cpp.o)
...
"std::1::basic_ostream<char, std::1::char_traits >::sentry::~sentry()", referenced from:
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamHttp_p.cpp.o)
...
"std::1::basic_ostream<char, std::1::char_traits >::~basic_ostream()", referenced from:
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_ostream<char, std::1::char_traits >::~basic_ostream()", referenced from:
construction vtable for std::1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_ostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_ostream<char, std::__1::char_traits >::operator<<(int)", referenced from:
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate*, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::SamSequence::SamSequence(std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&, int const&) in libbamtools.a(SamSequence.cpp.o)
BamTools::Internal::HttpRequestHeader::ToString() const in libbamtools.a(HttpHeader_p.cpp.o)
BamTools::Internal::HttpResponseHeader::ToString() const in libbamtools.a(HttpHeader_p.cpp.o)
BamTools::Internal::HostAddress::GetIPString() const in libbamtools.a(HostAddress_p.cpp.o)
"std::1::basic_ostream<char, std::1::char_traits >::operator<<(unsigned int)", referenced from:
BamTools::Internal::BamStandardIndex::CheckBufferSize(char&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::CheckBufferSize(unsigned char&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::ReadIntoBuffer(unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::HostAddress::GetIPString() const in libbamtools.a(HostAddress_p.cpp.o)
"std::__1::basic_ostream<char, std::1::char_traits >::operator<<(unsigned long)", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::SamHeaderValidator::PrintErrorMessages(std::1::basic_ostream<char, std::1::char_traits >&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::SamHeaderValidator::PrintWarningMessages(std::1::basic_ostream<char, std::1::char_traits >&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
"std::1::basic_ostream<char, std::__1::char_traits >::operator<<(unsigned short)", referenced from:
BamTools::Internal::TcpSocket::ConnectToHost(std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&, unsigned short, BamTools::IBamIODevice::OpenMode) in libbamtools.a(TcpSocket_p.cpp.o)
"std::1::basic_ostream<char, std::1::char_traits >::operator<<(long long)", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamStandardIndex::ReadIntoBuffer(unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamFtp::ConnectDataSocket() in libbamtools.a(BamFtp_p.cpp.o)
BamTools::Internal::BamHttp::SendGetRequest(unsigned long) in libbamtools.a(BamHttp_p.cpp.o)
"std::1::basic_iostream<char, std::1::char_traits >::~basic_iostream()", referenced from:
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_iostream<char, std::1::char_traits >::~basic_iostream()", referenced from:
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_iostream<char, std::1::char_traits >::~basic_iostream()", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(SamHeader.cpp.o)
...
"std::1::basic_streambuf<char, std::__1::char_traits >::sync()", referenced from:
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std::1::char_traits >::imbue(std::1::locale const&)", referenced from:
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std::1::char_traits >::uflow()", referenced from:
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std::__1::char_traits >::setbuf(char, long)", referenced from:
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_streambuf<char, std::__1::char_traits >::xsgetn(char*, long)", referenced from:
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std::1::char_traits >::xsputn(char const, long)", referenced from:
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_streambuf<char, std::__1::char_traits >::showmanyc()", referenced from:
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std::1::char_traits >::basic_streambuf()", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::Split(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::CheckBufferSize(char&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::basic_streambuf<char, std::1::char_traits >::~basic_streambuf()", referenced from:
std::1::basic_stringstream<char, std::1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::~basic_stringbuf() in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::~basic_stringbuf() in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_stringstream<char, std::1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::~basic_stringbuf() in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::~basic_stringbuf() in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_stringstream<char, std::1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(SamHeader.cpp.o)
...
"std::1::cerr", referenced from:
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
BamTools::SamProgramChain::First() in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamProgramChain::Last() in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamProgramChain::operator[](std::1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamProgramChain.cpp.o)
"std::1::ctype::id", referenced from:
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std::1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
std::__1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"void std::1::sort<std::1::less<long long, long long>&, long long>(long long, long long, std::1::less<long long, long long>&)", referenced from:
BamTools::Internal::BamStandardIndex::GetOffset(BamTools::BamRegion const&, long long&, bool) in libbamtools.a(BamStandardIndex_p.cpp.o)
"void std::1::sort<std::1::less<unsigned long long, unsigned long long>&, unsigned long long>(unsigned long long, unsigned long long, std::1::less<unsigned long long, unsigned long long>&)", referenced from:
BamTools::Internal::BamStandardIndex::SortLinearOffsets(std::1::vector<unsigned long long, std::1::allocator >&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::WriteLinearOffsets(int const&, std::1::vector<unsigned long long, std::1::allocator >&) in libbamtools.a(BamStandardIndex_p.cpp.o)
"std::1::locale::~locale()", referenced from:
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::__1::char_traits >(std::1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std::1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
std::__1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::ios_base::set_badbit_and_consider_rethrow()", referenced from:
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::__1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
std::1::basic_istream<char, std::1::char_traits >& std::1::getline<char, std::1::char_traits, std::1::allocator >(std::1::basic_istream<char, std::__1::char_traits >&, std::1::basic_string<char, std::1::char_traits, std::__1::allocator >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::__1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::__1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::__1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::ios_base::init(void)", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::Split(std::1::basic_string<char, std::__1::char_traits, std::1::allocator > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::CheckBufferSize(char&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::ios_base::clear(unsigned int)", referenced from:
std::__1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
std::1::basic_istream<char, std::__1::char_traits >& std::1::getline<char, std::1::char_traits, std::1::allocator >(std::1::basic_istream<char, std::1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std::1::allocator >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::1::char_traits >&, char const, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_ios<char, std::__1::char_traits >::~basic_ios()", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std::__1::allocator >::~basic_stringstream() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(SamHeader.cpp.o)
...
"std::1::basic_string<char, std::__1::char_traits, std::1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(char const*, std::1::basic_string<char, std::1::char_traits, std::__1::allocator > const&)", referenced from:
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::Internal::BamToolsIndex::Create() in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::GetOffset(BamTools::BamRegion const&, long long&, bool) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::SamHeaderValidator::ValidateVersion() in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::SamHeaderValidator::ValidateSortOrder() in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::SamHeaderValidator::ValidateGroupOrder() in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"typeinfo for std::1::basic_istream<char, std::1::char_traits >", referenced from:
construction vtable for std::__1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_istringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
typeinfo for std::__1::basic_istringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"typeinfo for std::1::basic_ostream<char, std::1::char_traits >", referenced from:
construction vtable for std::__1::basic_ostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"typeinfo for std::__1::basic_iostream<char, std::1::char_traits >", referenced from:
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
typeinfo for std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
typeinfo for std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
typeinfo for std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
...
"typeinfo for std::1::basic_streambuf<char, std::1::char_traits >", referenced from:
typeinfo for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
typeinfo for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
typeinfo for std::__1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
typeinfo for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
typeinfo for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
typeinfo for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
typeinfo for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"non-virtual thunk to std::1::basic_iostream<char, std::1::char_traits >::~basic_iostream()", referenced from:
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"non-virtual thunk to std::1::basic_iostream<char, std::1::char_traits >::~basic_iostream()", referenced from:
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"virtual thunk to std::__1::basic_istream<char, std::1::char_traits >::~basic_istream()", referenced from:
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_istringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std::1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"virtual thunk to std::1::basic_istream<char, std::1::char_traits >::~basic_istream()", referenced from:
construction vtable for std::1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits
Hello Gabriel, Here is the compilation output I get when I tried to compile on Mac Mojave v. 10.14.4 Peter
uhtred:glactools-master bgppermp$ make rm -rf bamtools/ git clone --recursive https://github.com/pezmaster31/bamtools.git Cloning into 'bamtools'... remote: Enumerating objects: 4857, done. remote: Total 4857 (delta 0), reused 0 (delta 0), pack-reused 4857 Receiving objects: 100% (4857/4857), 6.06 MiB | 8.05 MiB/s, done. Resolving deltas: 100% (3373/3373), done. cd bamtools/ && mkdir -p build/ && cd build/ && cmake .. && make && cd ../.. -- The CXX compiler identification is AppleClang 10.0.1.10010046 -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:20 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD.
-- Found PkgConfig: /usr/local/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'jsoncpp>=1' Did NOT find system JsonCpp, instead using bundled version -- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.11") -- Configuring done -- Generating done -- Build files have been written to: /Users/bgppermp/Downloads/glactools-master/bamtools/build Scanning dependencies of target SharedHeaders [ 0%] Built target SharedHeaders Scanning dependencies of target APIHeaders [ 0%] Built target APIHeaders Scanning dependencies of target AlgorithmsHeaders [ 0%] Built target AlgorithmsHeaders Scanning dependencies of target BamTools [ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o [ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o [ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o [ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o [ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o [ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o [ 11%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o [ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o [ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o [ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o [ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o [ 19%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o [ 21%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o [ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o [ 24%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o [ 26%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o [ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o [ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o [ 31%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o [ 32%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o [ 34%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o [ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o [ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o [ 39%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o [ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o [ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o [ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o [ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o [ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o [ 49%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o [ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o [ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o [ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o [ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o [ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o [ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o [ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o [ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o [ 63%] Linking CXX static library libbamtools.a [ 63%] Built target BamTools Scanning dependencies of target jsoncpp [ 65%] Building CXX object src/third_party/jsoncpp/CMakeFiles/jsoncpp.dir/jsoncpp.cpp.o [ 67%] Linking CXX static library libjsoncpp.a [ 67%] Built target jsoncpp Scanning dependencies of target BamTools-utils [ 68%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o [ 70%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o [ 72%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o [ 73%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o [ 75%] Linking CXX static library libbamtools-utils.a [ 75%] Built target BamTools-utils Scanning dependencies of target bamtools_cmd [ 77%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o [ 78%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o [ 80%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o [ 81%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o [ 83%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o [ 85%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o [ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o [ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o [ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o [ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o [ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o [ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o [100%] Linking CXX executable bamtools [100%] Built target bamtools_cmd rm -rf htslib/ git clone --recursive https://github.com/samtools/htslib.git Cloning into 'htslib'... remote: Enumerating objects: 10, done. remote: Counting objects: 100% (10/10), done. remote: Compressing objects: 100% (10/10), done. remote: Total 11614 (delta 1), reused 3 (delta 0), pack-reused 11604 Receiving objects: 100% (11614/11614), 8.50 MiB | 6.15 MiB/s, done. Resolving deltas: 100% (8214/8214), done. cd htslib/ && make && cd ../ echo '/ Default config.h generated by Makefile /' > config.h echo '#define HAVE_LIBBZ2 1' >> config.h echo '#define HAVE_LIBLZMA 1' >> config.h echo '#define HAVE_LZMA_H 1' >> config.h echo '#define HAVE_FSEEKO 1' >> config.h echo '#define HAVE_DRAND48 1' >> config.h echo '#define HAVE_LIBCURL 1' >> config.h gcc -g -Wall -O2 -I. -c -o kfunc.o kfunc.c gcc -g -Wall -O2 -I. -c -o knetfile.o knetfile.c gcc -g -Wall -O2 -I. -c -o kstring.o kstring.c gcc -g -Wall -O2 -I. -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -g -Wall -O2 -I. -c -o bgzf.o bgzf.c gcc -g -Wall -O2 -I. -c -o errmod.o errmod.c gcc -g -Wall -O2 -I. -c -o faidx.o faidx.c gcc -g -Wall -O2 -I. -c -o header.o header.c gcc -g -Wall -O2 -I. -c -o hfile.o hfile.c gcc -g -Wall -O2 -I. -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.9-288-g830c061"' > version.h gcc -g -Wall -O2 -I. -c -o hts.o hts.c gcc -g -Wall -O2 -I. -c -o hts_os.o hts_os.c gcc -g -Wall -O2 -I. -c -o md5.o md5.c gcc -g -Wall -O2 -I. -c -o multipart.o multipart.c gcc -g -Wall -O2 -I. -c -o probaln.o probaln.c gcc -g -Wall -O2 -I. -c -o realn.o realn.c gcc -g -Wall -O2 -I. -c -o regidx.o regidx.c gcc -g -Wall -O2 -I. -c -o region.o region.c gcc -g -Wall -O2 -I. -c -o sam.o sam.c gcc -g -Wall -O2 -I. -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -g -Wall -O2 -I. -c -o vcf_sweep.o vcf_sweep.c gcc -g -Wall -O2 -I. -c -o tbx.o tbx.c gcc -g -Wall -O2 -I. -c -o textutils.o textutils.c gcc -g -Wall -O2 -I. -c -o thread_pool.o thread_pool.c gcc -g -Wall -O2 -I. -c -o vcf.o vcf.c gcc -g -Wall -O2 -I. -c -o vcfutils.o vcfutils.c gcc -g -Wall -O2 -I. -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -g -Wall -O2 -I. -c -o cram/cram_decode.o cram/cram_decode.c gcc -g -Wall -O2 -I. -c -o cram/cram_encode.o cram/cram_encode.c gcc -g -Wall -O2 -I. -c -o cram/cram_external.o cram/cram_external.c gcc -g -Wall -O2 -I. -c -o cram/cram_index.o cram/cram_index.c gcc -g -Wall -O2 -I. -c -o cram/cram_io.o cram/cram_io.c gcc -g -Wall -O2 -I. -c -o cram/cram_samtools.o cram/cram_samtools.c gcc -g -Wall -O2 -I. -c -o cram/cram_stats.o cram/cram_stats.c gcc -g -Wall -O2 -I. -c -o cram/mFILE.o cram/mFILE.c gcc -g -Wall -O2 -I. -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -g -Wall -O2 -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -g -Wall -O2 -I. -c -o cram/rANS_static.o cram/rANS_static.c gcc -g -Wall -O2 -I. -c -o cram/string_alloc.o cram/string_alloc.c gcc -g -Wall -O2 -I. -c -o hfile_libcurl.o hfile_libcurl.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/string_alloc.o hfile_libcurl.o ranlib libhts.a gcc -dynamiclib -install_name /usr/local/lib/libhts.2to3part10.dylib -current_version 1.9.255 -compatibility_version 2.10 -o libhts.dylib kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/string_alloc.o hfile_libcurl.o -lz -lm -lbz2 -llzma -lcurl ln -sf libhts.dylib libhts.2to3part10.dylib gcc -g -Wall -O2 -I. -c -o bgzip.o bgzip.c gcc -o bgzip bgzip.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o htsfile.o htsfile.c gcc -o htsfile htsfile.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o tabix.o tabix.c gcc -o tabix tabix.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/hts_endian.o test/hts_endian.c gcc -o test/hts_endian test/hts_endian.o -lz -lm -lbz2 -llzma -lcurl gcc -g -Wall -O2 -I. -c -o test/fieldarith.o test/fieldarith.c gcc -o test/fieldarith test/fieldarith.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/hfile.o test/hfile.c gcc -o test/hfile test/hfile.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/pileup.o test/pileup.c gcc -o test/pileup test/pileup.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/sam.o test/sam.c gcc -o test/sam test/sam.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test_bgzf.o test/test_bgzf.c gcc -o test/test_bgzf test/test_bgzf.o libhts.a -lz -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test_kstring.o test/test_kstring.c gcc -o test/test_kstring test/test_kstring.o libhts.a -lz -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test_realn.o test/test_realn.c gcc -o test/test_realn test/test_realn.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test-regidx.o test/test-regidx.c gcc -o test/test-regidx test/test-regidx.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test_view.o test/test_view.c gcc -o test/test_view test/test_view.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test_index.o test/test_index.c gcc -o test/test_index test/test_index.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test-vcf-api.o test/test-vcf-api.c gcc -o test/test-vcf-api test/test-vcf-api.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c gcc -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test-bcf-sr.o test/test-bcf-sr.c gcc -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c gcc -g -Wall -O2 -I. -c -o test/test-bcf-translate.o test/test-bcf-translate.c gcc -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -lz -lm -lbz2 -llzma -lcurl -lpthread gcc -g -Wall -O2 -I. -c -o test/test-parse-reg.o test/test-parse-reg.c gcc -o test/test-parse-reg test/test-parse-reg.o libhts.a -lz -lm -lbz2 -llzma -lcurl -lpthread rm -rf libgab/ git clone --recursive https://github.com/grenaud/libgab.git Cloning into 'libgab'... remote: Enumerating objects: 300, done. remote: Total 300 (delta 0), reused 0 (delta 0), pack-reused 300 Receiving objects: 100% (300/300), 114.47 KiB | 626.00 KiB/s, done. Resolving deltas: 100% (187/187), done. make -C libgab g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c utils.cpp -o utils.o g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c testUtils.cpp -o testUtils.o testUtils.cpp: In function ‘int main(int, char*)’: testUtils.cpp:22:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for(unsigned int c= 2147400000;c<10147400000;c+=1000000) ^~~ testUtils.cpp:24:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ return 0; ^, std::allocator > const&)", referenced from:
_main in testRecons.o
"BamTools::BamAlignment::FindTag(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&, char &, unsigned int const&, unsigned int&) const", referenced from:
reconstructRefWithPosOnRead[abi:cxx11](BamTools::BamAlignment const) in ReconsReferenceBAM.o
reconstructRefWithPos[abi:cxx11](BamTools::BamAlignment const) in ReconsReferenceBAM.o
"std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >::at(unsigned long) const", referenced from:
BamTools::Internal::SamHeaderValidator::CheckNameFormat(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::SamHeaderValidator::CheckSequencingTechnology(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::HttpRequestHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
"std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >::find(char, unsigned long) const", referenced from:
BamTools::Internal::SamHeaderValidator::ValidateVersion() in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::BamFtp::ParseUrl(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(BamFtp_p.cpp.o)
BamTools::Internal::BamFtp::ParsePassiveResponse() in libbamtools.a(BamFtp_p.cpp.o)
BamTools::Internal::BamHttp::ParseUrl(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(BamHttp_p.cpp.o)
BamTools::Internal::HttpHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
BamTools::Internal::HttpRequestHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
BamTools::Internal::HttpResponseHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
...
"std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >::rfind(char, unsigned long) const", referenced from:
BamTools::Internal::BamIndexFactory::CreateIndexFromFilename(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, BamTools::Internal::BamReaderPrivate) in libbamtools.a(BamIndexFactory_p.cpp.o)
BamTools::Internal::BamIndexFactory::FileExtension(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(BamIndexFactory_p.cpp.o)
BamTools::Internal::HostAddress::ParseAddress() in libbamtools.a(HostAddress_p.cpp.o)
"std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >::compare(unsigned long, unsigned long, char const , unsigned long) const", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamDeviceFactory::CreateDevice(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(BamDeviceFactory_p.cpp.o)
"std::1::vector_base_common::throw_length_error() const", referenced from:
BamTools::BamAlignment::BamAlignment(BamTools::BamAlignment const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::BamAlignment::GetSoftClips(std::1::vector<int, std::1::allocator >&, std:: 1::vector<int, std::1::allocator >&, std:: 1::vector<int, std::1::allocator >&, bool) const in libbamtools.a(BamAlignment.cpp.o)
void std:: 1::vector<std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >, std::1::allocator<std::1::basic_string<char, std::1::char_traits, std::1::allocator > > >:: push_back_slow_path<std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const>(std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::LoadNextAlignment(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o)
void std::1::vector<std::1::basic_string<char, std:: 1::char_traits, std::1::allocator >, std:: 1::allocator<std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > > >::push_back_slow_path<std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const>(std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
void std:: 1::vector<BamTools::RefData, std::1::allocator >:: push_back_slow_path(BamTools::RefData const&) in libbamtools.a(BamReader_p.cpp.o)
std::1::vector<BamTools::CustomHeaderTag, std::1::allocator >::vector(std::1::vector<BamTools::CustomHeaderTag, std::1::allocator > const&) in libbamtools.a(SamHeader.cpp.o)
...
"std::1::vector_base_common::throw_out_of_range() const", referenced from:
BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamSequenceDictionary::Remove(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamSequenceDictionary.cpp.o)
BamTools::SamSequenceDictionary::operator[](std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(SamSequenceDictionary.cpp.o)
BamTools::SamReadGroupDictionary::Remove(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamReadGroupDictionary.cpp.o)
BamTools::SamReadGroupDictionary::operator[](std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(SamReadGroupDictionary.cpp.o)
BamTools::Internal::BamToolsIndex::ReadReferenceEntry(BamTools::Internal::BtiReferenceEntry&) in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamToolsIndex::HasAlignments(int const&) const in libbamtools.a(BamToolsIndex_p.cpp.o)
...
"std:: 1::basic_string_common:: throw_length_error() const", referenced from:
std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&, char) in libbamtools.a(BamAlignment.cpp.o)
std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > std:: 1::operator+<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&, std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::Close() in libbamtools.a(BamReader_p.cpp.o)
std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > std:: 1::operator+<char, std::__1::char_traits, std:: 1::allocator >(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::GetNextAlignmentCore(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::LoadReferenceData() in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::Open(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
...
"std::1::locale::use_facet(std::1::locale::id&) const", referenced from:
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >::operator<<(std:: 1::basic_ostream<char, std::1::char_traits >& (*)(std::__1::basic_ostream<char, std:: 1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::__1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
std:: 1::basic_ostream<char, std:: 1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::ios_base::getloc() const", referenced from:
std::__1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const , unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std:: 1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
std::__1::basic_ostream<char, std:: 1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >::at(unsigned long)", referenced from:
BamTools::Internal::HttpResponseHeader::ParseLine(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
"std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >::append(char const, unsigned long)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > std:: 1::operator+<char, std::__1::char_traits, std:: 1::allocator >(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::Tag2Cigar(BamTools::BamAlignment&, BamTools::RaiiBuffer&) in libbamtools.a(BamReader_p.cpp.o)
std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_string<char, std::__1::char_traits, std::__1::allocator > const&, char const ) in libbamtools.a(BamReader_p.cpp.o)
std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(BgzfStream_p.cpp.o)
std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > std:: 1::operator+<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&, std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
...
"std:: 1::basic_string<char, std::1::char_traits, std::1::allocator >::append(unsigned long, char)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
"std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator >::assign(char const*)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
BamTools::SamHeader::SetHeaderText(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&) in libbamtools.a(SamHeader.cpp.o)
BamTools::Internal::BamToolsIndex::Create() in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamToolsIndex::Jump(BamTools::BamRegion const&, bool*) in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamToolsIndex::Load(std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::Jump(BamTools::BamRegion const&, bool*) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator >::assign(char const*, unsigned long)", referenced from:
BamTools::BamAlignment::RemoveTag(std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::LoadNextAlignment(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o)
"std:: 1::basic_string<char, std::1::char_traits, std::1::allocator >::resize(unsigned long, char)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
std:: 1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(BgzfStream_p.cpp.o)
std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(SamHeader.cpp.o)
std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator >::overflow(int) in libbamtools.a(SamFormatParser_p.cpp.o)
std:: 1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::str(std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator >::reserve(unsigned long)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::Tag2Cigar(BamTools::BamAlignment&, BamTools::RaiiBuffer&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamHttp::ParseUrl(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(BamHttp_p.cpp.o)
"std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator >::push_back(char)", referenced from:
std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > std:: 1::operator+<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&, char) in libbamtools.a(BamAlignment.cpp.o)
std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator >::overflow(int) in libbamtools.a(BgzfStream_p.cpp.o)
std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator >::overflow(int) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std:: 1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(SamHeader.cpp.o)
std:: 1::basic_istream<char, std:: 1::char_traits >& std::1::getline<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_istream<char, std::1::char_traits >&, std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(SamFormatParser_p.cpp.o)
std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator >::overflow(int) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator >::basic_string(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&)", referenced from:
BamTools::BamAlignment::BamAlignment(BamTools::BamAlignment const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::BamAlignment::GetErrorString() const in libbamtools.a(BamAlignment.cpp.o)
BamTools::BamAlignment::GetTagNames() const in libbamtools.a(BamAlignment.cpp.o)
void std:: 1::vector<std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >, std::1::allocator<std::1::basic_string<char, std::1::char_traits, std::1::allocator > > >:: push_back_slow_path<std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const>(std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::Filename() const in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::GetErrorString() const in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::GetReferenceID(std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) const in libbamtools.a(BamReader_p.cpp.o)
...
"std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator >::basic_string(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&, unsigned long, unsigned long, std:: 1::allocator const&)", referenced from:
BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamIndexFactory::CreateIndexFromFilename(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&, BamTools::Internal::BamReaderPrivate*) in libbamtools.a(BamIndexFactory_p.cpp.o)
BamTools::Internal::BamIndexFactory::FileExtension(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(BamIndexFactory_p.cpp.o)
BamTools::Internal::SamFormatParser::ParseSamLine(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::ParseHDLine(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::ParseSQLine(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::ParseRGLine(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
...
"std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator >::~basic_string()", referenced from:
BamTools::BamAlignment::SetErrorString(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&, std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&) const in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::SetErrorString(std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&, std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
GLOBALsub_I_BamException_p.cpp in libbamtools.a(BamException_p.cpp.o)
GLOBALsub_I_SamHeader.cpp in libbamtools.a(SamHeader.cpp.o)
GLOBALsub_I_BamToolsIndex_p.cpp in libbamtools.a(BamToolsIndex_p.cpp.o)
GLOBALsub_I_SamFormatParser_p.cpp in libbamtools.a(SamFormatParser_p.cpp.o)
GLOBALsub_I_BamStandardIndex_p.cpp in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::basic_string<char, std::1::char_traits, std::1::allocator >::operator=(std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&)", referenced from:
BamTools::BamAlignment::SetErrorString(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) const in libbamtools.a(BamAlignment.cpp.o)
BamTools::Internal::BamReaderPrivate::SetErrorString(std:: 1::basic_string<char, std::1::char_traits, std::1::allocator > const&, std:: 1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::GetNextAlignment(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::LoadReferenceData() in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamReaderPrivate::Open(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(BamReader_p.cpp.o)
BamTools::Internal::BamRandomAccessController::SetErrorString(std::__1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&, std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::Internal::BamIndexFactory::FindIndexFilename(std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamIndexFactory_p.cpp.o)
...
"std:: 1::basic_istream<char, std::1::char_traits >::sentry::sentry(std::__1::basic_istream<char, std:: 1::char_traits >&, bool)", referenced from:
std::1::basic_istream<char, std::__1::char_traits >& std:: 1::getline<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_istream<char, std:: 1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
std::1::basic_istream<char, std::__1::char_traits >& std:: 1::getline<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_istream<char, std:: 1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >&, char) in libbamtools.a(BamFtp_p.cpp.o)
std::1::basic_istream<char, std::__1::char_traits >& std:: 1::getline<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_istream<char, std:: 1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >&, char) in libbamtools.a(HttpHeader_p.cpp.o)
std::1::basic_istream<char, std::__1::char_traits >& std:: 1::getline<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_istream<char, std:: 1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >&, char) in libbamtools.a(HostAddress_p.cpp.o)
"std::1::basic_istream<char, std::1::char_traits >::~basic_istream()", referenced from:
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_istringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"std::__1::basic_istream<char, std:: 1::char_traits >::~basic_istream()", referenced from:
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_istringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"std:: 1::basic_istream<char, std::1::char_traits >::~basic_istream()", referenced from:
BamTools::Internal::SamFormatParser::Parse(std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
std:: 1::basic_istringstream<char, std::1::char_traits, std::1::allocator >::~basic_istringstream() in libbamtools.a(SamFormatParser_p.cpp.o)
"std:: 1::basic_istream<char, std:: 1::char_traits >::operator>>(unsigned int&)", referenced from:
BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
"std::1::basic_istream<char, std::__1::char_traits >::operator>>(unsigned short&)", referenced from:
BamTools::Internal::TcpSocket::ConnectImpl(BamTools::Internal::HostInfo const&, std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&, BamTools::IBamIODevice::OpenMode) in libbamtools.a(TcpSocket_p.cpp.o)
"std:: 1::basic_ostream<char, std::1::char_traits >::put(char)", referenced from:
std::__1::basic_ostream<char, std:: 1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std:: 1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintHD(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintSQ(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintRG(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintPG(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintCO(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"std:: 1::basic_ostream<char, std::1::char_traits >::flush()", referenced from:
std::__1::basic_ostream<char, std:: 1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std:: 1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintHD(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintSQ(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintRG(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintPG(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
BamTools::Internal::SamFormatPrinter::PrintCO(std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"std:: 1::basic_ostream<char, std::1::char_traits >::sentry::sentry(std::__1::basic_ostream<char, std:: 1::char_traits >&)", referenced from:
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamHttp_p.cpp.o)
...
"std:: 1::basic_ostream<char, std::1::char_traits >::sentry::~sentry()", referenced from:
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamHttp_p.cpp.o)
...
"std:: 1::basic_ostream<char, std::1::char_traits >::~basic_ostream()", referenced from:
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std:: 1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std:: 1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std:: 1::basic_ostream<char, std::1::char_traits >::~basic_ostream()", referenced from:
construction vtable for std:: 1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std:: 1::basic_ostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std:: 1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_ostream<char, std::__1::char_traits >::operator<<(int)", referenced from:
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate*, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::SamSequence::SamSequence(std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&, int const&) in libbamtools.a(SamSequence.cpp.o)
BamTools::Internal::HttpRequestHeader::ToString() const in libbamtools.a(HttpHeader_p.cpp.o)
BamTools::Internal::HttpResponseHeader::ToString() const in libbamtools.a(HttpHeader_p.cpp.o)
BamTools::Internal::HostAddress::GetIPString() const in libbamtools.a(HostAddress_p.cpp.o)
"std:: 1::basic_ostream<char, std::1::char_traits >::operator<<(unsigned int)", referenced from:
BamTools::Internal::BamStandardIndex::CheckBufferSize(char&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::CheckBufferSize(unsigned char&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::ReadIntoBuffer(unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::HostAddress::GetIPString() const in libbamtools.a(HostAddress_p.cpp.o)
"std::__1::basic_ostream<char, std:: 1::char_traits >::operator<<(unsigned long)", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::SamHeaderValidator::PrintErrorMessages(std::1::basic_ostream<char, std::1::char_traits >&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::SamHeaderValidator::PrintWarningMessages(std:: 1::basic_ostream<char, std::1::char_traits >&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
"std::1::basic_ostream<char, std::__1::char_traits >::operator<<(unsigned short)", referenced from:
BamTools::Internal::TcpSocket::ConnectToHost(std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&, unsigned short, BamTools::IBamIODevice::OpenMode) in libbamtools.a(TcpSocket_p.cpp.o)
"std:: 1::basic_ostream<char, std::1::char_traits >::operator<<(long long)", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamStandardIndex::ReadIntoBuffer(unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamFtp::ConnectDataSocket() in libbamtools.a(BamFtp_p.cpp.o)
BamTools::Internal::BamHttp::SendGetRequest(unsigned long) in libbamtools.a(BamHttp_p.cpp.o)
"std:: 1::basic_iostream<char, std::1::char_traits >::~basic_iostream()", referenced from:
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_iostream<char, std::1::char_traits >::~basic_iostream()", referenced from:
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_iostream<char, std:: 1::char_traits >::~basic_iostream()", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator >::~basic_stringstream() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator >::~basic_stringstream() in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator >::~basic_stringstream() in libbamtools.a(SamHeader.cpp.o)
...
"std::1::basic_streambuf<char, std::__1::char_traits >::sync()", referenced from:
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std:: 1::char_traits >::imbue(std::1::locale const&)", referenced from:
vtable for std::1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std:: 1::char_traits >::uflow()", referenced from:
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std::__1::char_traits >::setbuf(char , long)", referenced from:
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_streambuf<char, std::__1::char_traits >::xsgetn(char*, long)", referenced from:
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std:: 1::char_traits >::xsputn(char const, long)", referenced from:
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::1::basic_stringbuf<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_streambuf<char, std::__1::char_traits >::showmanyc()", referenced from:
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
vtable for std:: 1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
vtable for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::__1::basic_streambuf<char, std:: 1::char_traits >::basic_streambuf()", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate , BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::Split(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::CheckBufferSize(char&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::basic_streambuf<char, std::1::char_traits >::~basic_streambuf()", referenced from:
std:: 1::basic_stringstream<char, std::1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(BgzfStream_p.cpp.o)
std:: 1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::~basic_stringbuf() in libbamtools.a(BgzfStream_p.cpp.o)
std:: 1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator >::~basic_stringbuf() in libbamtools.a(BgzfStream_p.cpp.o)
std:: 1::basic_stringstream<char, std::1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(BamRandomAccessController_p.cpp.o)
std:: 1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator >::~basic_stringbuf() in libbamtools.a(BamRandomAccessController_p.cpp.o)
std:: 1::basic_stringbuf<char, std::1::char_traits, std::1::allocator >::~basic_stringbuf() in libbamtools.a(BamRandomAccessController_p.cpp.o)
std:: 1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator >::~basic_stringstream() in libbamtools.a(SamHeader.cpp.o)
...
"std::1::cerr", referenced from:
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
BamTools::SamProgramChain::First() in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamProgramChain::Last() in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o)
BamTools::SamProgramChain::operator[](std::1::basic_string<char, std:: 1::char_traits, std::1::allocator > const&) in libbamtools.a(SamProgramChain.cpp.o)
"std:: 1::ctype::id", referenced from:
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std:: 1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
std::__1::basic_ostream<char, std:: 1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"void std::1::sort<std::1::less<long long, long long>&, long long>(long long, long long, std::1::less<long long, long long>&)", referenced from:
BamTools::Internal::BamStandardIndex::GetOffset(BamTools::BamRegion const&, long long&, bool) in libbamtools.a(BamStandardIndex_p.cpp.o)
"void std::1::sort<std::1::less<unsigned long long, unsigned long long>&, unsigned long long>(unsigned long long, unsigned long long, std::1::less<unsigned long long, unsigned long long>&)", referenced from:
BamTools::Internal::BamStandardIndex::SortLinearOffsets(std::1::vector<unsigned long long, std::1::allocator >&) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::WriteLinearOffsets(int const&, std::1::vector<unsigned long long, std::1::allocator >&) in libbamtools.a(BamStandardIndex_p.cpp.o)
"std::1::locale::~locale()", referenced from:
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::__1::char_traits >(std:: 1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >::operator<<(std::1::basic_ostream<char, std::__1::char_traits >& (*)(std:: 1::basic_ostream<char, std::1::char_traits >&)) in libbamtools.a(SamProgramChain.cpp.o)
std::__1::basic_ostream<char, std:: 1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::ios_base::set_badbit_and_consider_rethrow()", referenced from:
std::1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::__1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
std:: 1::basic_istream<char, std::1::char_traits >& std::1::getline<char, std::1::char_traits, std:: 1::allocator >(std::1::basic_istream<char, std::__1::char_traits >&, std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::__1::char_traits >(std:: 1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::__1::char_traits >(std:: 1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::__1::char_traits >(std:: 1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std:: 1::ios_base::init(void)", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
BamTools::Internal::SamFormatParser::Parse(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::SamFormatParser::Split(std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
BamTools::Internal::BamStandardIndex::CheckBufferSize(char&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"std::1::ios_base::clear(unsigned int)", referenced from:
std::__1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const , unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
std::1::basic_istream<char, std::__1::char_traits >& std:: 1::getline<char, std::1::char_traits, std::1::allocator >(std:: 1::basic_istream<char, std:: 1::char_traits >&, std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std::__1::char_traits >&, char const , unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
std::1::basic_ostream<char, std::__1::char_traits >& std:: 1::put_character_sequence<char, std::1::char_traits >(std::1::basic_ostream<char, std::1::char_traits >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
std:: 1::basic_ostream<char, std::1::char_traits >& std::1::put_character_sequence<char, std::1::char_traits >(std::__1::basic_ostream<char, std:: 1::char_traits >&, char const, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"std::1::basic_ios<char, std::__1::char_traits >::~basic_ios()", referenced from:
BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o)
std:: 1::basic_stringstream<char, std::__1::char_traits, std::__1::allocator >::~basic_stringstream() in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate , BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator >::~basic_stringstream() in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator >::~basic_stringstream() in libbamtools.a(SamHeader.cpp.o)
...
"std::1::basic_string<char, std::__1::char_traits, std:: 1::allocator > std::1::operator+<char, std::1::char_traits, std::1::allocator >(char const*, std:: 1::basic_string<char, std::1::char_traits, std::__1::allocator > const&)", referenced from:
BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
BamTools::Internal::BamToolsIndex::Create() in libbamtools.a(BamToolsIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::BamStandardIndex::GetOffset(BamTools::BamRegion const&, long long&, bool) in libbamtools.a(BamStandardIndex_p.cpp.o)
BamTools::Internal::SamHeaderValidator::ValidateVersion() in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::SamHeaderValidator::ValidateSortOrder() in libbamtools.a(SamHeaderValidator_p.cpp.o)
BamTools::Internal::SamHeaderValidator::ValidateGroupOrder() in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"typeinfo for std:: 1::basic_istream<char, std::1::char_traits >", referenced from:
construction vtable for std::__1::basic_istream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_istringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
typeinfo for std::__1::basic_istringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
...
"typeinfo for std:: 1::basic_ostream<char, std::1::char_traits >", referenced from:
construction vtable for std::__1::basic_ostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std:: 1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std:: 1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_ostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_ostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std:: 1::basic_ostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"typeinfo for std::__1::basic_iostream<char, std:: 1::char_traits >", referenced from:
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
typeinfo for std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
typeinfo for std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeader.cpp.o)
typeinfo for std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
...
"typeinfo for std:: 1::basic_streambuf<char, std::1::char_traits >", referenced from:
typeinfo for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
typeinfo for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
typeinfo for std::__1::basic_stringbuf<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
typeinfo for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
typeinfo for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
typeinfo for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
typeinfo for std:: 1::basic_stringbuf<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"non-virtual thunk to std:: 1::basic_iostream<char, std::1::char_traits >::~basic_iostream()", referenced from:
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"non-virtual thunk to std::1::basic_iostream<char, std::1::char_traits >::~basic_iostream()", referenced from:
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_iostream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_iostream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
construction vtable for std:: 1::basic_iostream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamHeaderValidator_p.cpp.o)
...
"virtual thunk to std::__1::basic_istream<char, std:: 1::char_traits >::~basic_istream()", referenced from:
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BamRandomAccessController_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(SamHeader.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_istringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(SamFormatParser_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits, std:: 1::allocator > in libbamtools.a(BamStandardIndex_p.cpp.o)
construction vtable for std::1::basic_istream<char, std::__1::char_traits >-in-std:: 1::basic_stringstream<char, std::1::char_traits, std::__1::allocator > in libbamtools.a(SamFormatPrinter_p.cpp.o)
...
"virtual thunk to std:: 1::basic_istream<char, std::1::char_traits >::~basic_istream()", referenced from:
construction vtable for std:: 1::basic_istream<char, std::1::char_traits >-in-std::__1::basic_stringstream<char, std:: 1::char_traits, std::1::allocator > in libbamtools.a(BgzfStream_p.cpp.o)
construction vtable for std::__1::basic_istream<char, std:: 1::char_traits >-in-std::1::basic_stringstream<char, std::__1::char_traits
~make -C gzstream/ g++ -I. -O -c -o gzstream.o gzstream.C ar cr libgzstream.a gzstream.o g++ -o testUtils testUtils.o utils.o gzstream/libgzstream.a -lz g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c ReconsReferenceBAM.cpp -o ReconsReferenceBAM.o g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c PutProgramInHeader.cpp -o PutProgramInHeader.o g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c FastQObj.cpp -o FastQObj.o g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c FastQParser.cpp -o FastQParser.o g++ -Wall -lm -O3 -I. -Igzstream/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/include/ -I/Users/bgppermp/Downloads/glactools-master/bamtools/build/src/include/ -c testRecons.cpp -o testRecons.o g++ -o testRecons testRecons.o utils.o /Users/bgppermp/Downloads/glactools-master/bamtools/build/src/api/libbamtools.a ReconsReferenceBAM.o gzstream/libgzstream.a -lz Undefined symbols for architecture x86_64: "BamTools::BamReader::Open(std::__cxx11::basic_string<char, std::char_traits