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grenaud / schmutzi

Maximum a posteriori estimate of contamination for ancient samples
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Schmutzi compilation issue with gcc 7.3.0 #7

Closed cwjeong closed 5 years ago

cwjeong commented 5 years ago

Upon trying to compile schmutzi with gcc 7.3.0, I got a large amount of error messages like this:

... BamReader_p.cpp:(.text+0x522): undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned long)' BamReader_p.cpp:(.text+0x535): undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::append(char const, unsigned long)' BamReader_p.cpp:(.text+0x546): undefined reference to `std::__cxx11::basic_string<char, std::char_traits, std::allocator >::append(char const, unsigned long)' ...

Switching to gcc v4.8.5 and starting over from the scratch, schmutzi compilation went well.

grenaud commented 5 years ago

Dear Choongwon, Thank you for reporting this along with the fix. I plan on removing bamtools from my programs as it seems to be no longer maintained.

Thank you!