greta-dev / greta

simple and scalable statistical modelling in R
https://greta-stats.org
Other
524 stars 63 forks source link

TF2 error - "adam" optimiser doesn't converge #579

Closed njtierney closed 2 weeks ago

njtierney commented 1 year ago
library(devtools)
#> Loading required package: usethis
library(testthat)
#> 
#> Attaching package: 'testthat'
#> The following object is masked from 'package:devtools':
#> 
#>     test_file
load_all(".")
#> ℹ Loading greta
#> ℹ Initialising python and checking dependencies, this may take a moment.
#> ✔ Initialising python and checking dependencies ... done!
#> 
#> Loaded Tensorflow version 2.10.0
source(here::here("tests/testthat/helpers.R"))

x <- rnorm(5, 2, 0.1)
z <- variable(dim = 5)
distribution(x) <- normal(z, 0.1)

m <- model(z)

optimisers <- lst(
  gradient_descent,
  adadelta,
  adagrad,
  adam,
  ftrl,
  rms_prop
)

opt_df <- opt_df_run(optimisers, m, x)
tidied_opt <- tidy_optimisers(opt_df, tolerance = 1e-2)

expect_true(all(tidied_opt$convergence == 0))
expect_true(all(tidied_opt$iterations <= 200))
expect_true(all(tidied_opt$close_to_truth))
#> Error: all(tidied_opt$close_to_truth) is not TRUE
#> 
#> `actual`:   FALSE
#> `expected`: TRUE

tidied_opt %>% 
  filter(!close_to_truth) %>% 
  select(opt,
         par_x_diff,
         par,
         convergence,
         iterations,
         x_val) %>% 
  unnest_longer(col = c(par_x_diff, par, x_val)) %>% 
  knitr::kable()
opt par_x_diff par convergence iterations x_val
adam 0.0160897 2.062043 0 89 2.045953
adam 0.0119581 1.885603 0 89 1.873645
adam 0.0080428 1.986543 0 89 1.978500
adam 0.0006338 2.157443 0 89 2.156809
adam 0.0172759 2.009987 0 89 1.992711

Created on 2022-12-15 with reprex v2.0.2

Session info ``` r sessioninfo::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.2.1 (2022-06-23) #> os macOS Monterey 12.3.1 #> system aarch64, darwin20 #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz Australia/Brisbane #> date 2022-12-15 #> pandoc 2.19.2 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown) #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> ! package * version date (UTC) lib source #> abind 1.4-5 2016-07-21 [1] CRAN (R 4.2.0) #> assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.2.0) #> backports 1.4.1 2021-12-13 [1] CRAN (R 4.2.0) #> base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.2.0) #> brio 1.1.3 2021-11-30 [1] CRAN (R 4.2.0) #> broom 1.0.1 2022-08-29 [1] CRAN (R 4.2.0) #> cachem 1.0.6 2021-08-19 [1] CRAN (R 4.2.0) #> callr 3.7.3 2022-11-02 [1] CRAN (R 4.2.0) #> cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.2.0) #> cli 3.4.1 2022-09-23 [1] CRAN (R 4.2.0) #> coda 0.19-4 2020-09-30 [1] CRAN (R 4.2.0) #> codetools 0.2-18 2020-11-04 [1] CRAN (R 4.2.1) #> colorspace 2.0-3 2022-02-21 [1] CRAN (R 4.2.0) #> crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.0) #> DBI 1.1.3 2022-06-18 [1] CRAN (R 4.2.0) #> dbplyr 2.2.1 2022-06-27 [1] CRAN (R 4.2.0) #> desc 1.4.2 2022-09-08 [1] CRAN (R 4.2.0) #> devtools * 2.4.5 2022-10-11 [1] CRAN (R 4.2.0) #> diffobj 0.3.5 2021-10-05 [1] CRAN (R 4.2.0) #> digest 0.6.30 2022-10-18 [1] CRAN (R 4.2.0) #> dplyr * 1.0.10 2022-09-01 [1] CRAN (R 4.2.0) #> ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.0) #> evaluate 0.18 2022-11-07 [1] CRAN (R 4.2.0) #> fansi 1.0.3 2022-03-24 [1] CRAN (R 4.2.0) #> fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.2.0) #> forcats * 0.5.2 2022-08-19 [1] CRAN (R 4.2.0) #> fs 1.5.2 2021-12-08 [1] CRAN (R 4.2.0) #> future 1.29.0 2022-11-06 [1] CRAN (R 4.2.0) #> gargle 1.2.1 2022-09-08 [1] CRAN (R 4.2.0) #> generics 0.1.3 2022-07-05 [1] CRAN (R 4.2.0) #> ggplot2 * 3.4.0 2022-11-04 [1] CRAN (R 4.2.0) #> globals 0.16.2 2022-11-21 [1] CRAN (R 4.2.1) #> glue 1.6.2 2022-02-24 [1] CRAN (R 4.2.0) #> googledrive 2.0.0 2021-07-08 [1] CRAN (R 4.2.0) #> googlesheets4 1.0.1 2022-08-13 [1] CRAN (R 4.2.0) #> P greta * 0.4.2.9000 2022-12-14 [?] load_all() #> gtable 0.3.1 2022-09-01 [1] CRAN (R 4.2.0) #> haven 2.5.1 2022-08-22 [1] CRAN (R 4.2.0) #> here 1.0.1 2020-12-13 [1] CRAN (R 4.2.0) #> highr 0.9 2021-04-16 [1] CRAN (R 4.2.0) #> hms 1.1.2 2022-08-19 [1] CRAN (R 4.2.0) #> htmltools 0.5.3 2022-07-18 [1] CRAN (R 4.2.0) #> htmlwidgets 1.5.4 2021-09-08 [1] CRAN (R 4.2.0) #> httpuv 1.6.6 2022-09-08 [1] CRAN (R 4.2.0) #> httr 1.4.4 2022-08-17 [1] CRAN (R 4.2.0) #> jsonlite 1.8.3 2022-10-21 [1] CRAN (R 4.2.0) #> knitr 1.41 2022-11-18 [1] CRAN (R 4.2.0) #> later 1.3.0 2021-08-18 [1] CRAN (R 4.2.0) #> lattice 0.20-45 2021-09-22 [1] CRAN (R 4.2.1) #> lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.2.0) #> listenv 0.8.0 2019-12-05 [1] CRAN (R 4.2.0) #> lubridate 1.9.0 2022-11-06 [1] CRAN (R 4.2.0) #> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.0) #> Matrix 1.5-3 2022-11-11 [1] CRAN (R 4.2.0) #> memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.0) #> mime 0.12 2021-09-28 [1] CRAN (R 4.2.0) #> miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.2.0) #> modelr 0.1.10 2022-11-11 [1] CRAN (R 4.2.0) #> munsell 0.5.0 2018-06-12 [1] CRAN (R 4.2.0) #> parallelly 1.32.1 2022-07-21 [1] CRAN (R 4.2.0) #> pillar 1.8.1 2022-08-19 [1] CRAN (R 4.2.0) #> pkgbuild 1.4.0 2022-11-27 [1] CRAN (R 4.2.1) #> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.0) #> pkgload 1.3.2 2022-11-16 [1] CRAN (R 4.2.0) #> png 0.1-8 2022-11-29 [1] CRAN (R 4.2.0) #> prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.2.0) #> processx 3.8.0 2022-10-26 [1] CRAN (R 4.2.0) #> profvis 0.3.7 2020-11-02 [1] CRAN (R 4.2.0) #> progress 1.2.2 2019-05-16 [1] CRAN (R 4.2.0) #> promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.2.0) #> ps 1.7.2 2022-10-26 [1] CRAN (R 4.2.0) #> purrr * 0.3.5 2022-10-06 [1] CRAN (R 4.2.0) #> R.cache 0.16.0 2022-07-21 [1] CRAN (R 4.2.0) #> R.methodsS3 1.8.2 2022-06-13 [1] CRAN (R 4.2.0) #> R.oo 1.25.0 2022-06-12 [1] CRAN (R 4.2.0) #> R.utils 2.12.2 2022-11-11 [1] CRAN (R 4.2.0) #> R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.0) #> Rcpp 1.0.9 2022-07-08 [1] CRAN (R 4.2.0) #> readr * 2.1.3 2022-10-01 [1] CRAN (R 4.2.0) #> readxl 1.4.1 2022-08-17 [1] CRAN (R 4.2.0) #> rematch2 2.1.2 2020-05-01 [1] CRAN (R 4.2.0) #> remotes 2.4.2 2021-11-30 [1] CRAN (R 4.2.0) #> reprex 2.0.2 2022-08-17 [1] CRAN (R 4.2.0) #> reticulate 1.26 2022-08-31 [1] CRAN (R 4.2.0) #> rlang 1.0.6 2022-09-24 [1] CRAN (R 4.2.0) #> rmarkdown 2.18 2022-11-09 [1] CRAN (R 4.2.0) #> rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.2.0) #> rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.2.0) #> rvest 1.0.3 2022-08-19 [1] CRAN (R 4.2.0) #> scales 1.2.1 2022-08-20 [1] CRAN (R 4.2.0) #> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.0) #> shiny 1.7.3 2022-10-25 [1] CRAN (R 4.2.0) #> stringi 1.7.8 2022-07-11 [1] CRAN (R 4.2.0) #> stringr * 1.5.0 2022-12-02 [1] CRAN (R 4.2.0) #> styler 1.8.1 2022-11-07 [1] CRAN (R 4.2.0) #> tensorflow 2.9.0 2022-05-21 [1] CRAN (R 4.2.0) #> testthat * 3.1.5 2022-10-08 [1] CRAN (R 4.2.0) #> tfautograph 0.3.2 2021-09-17 [1] CRAN (R 4.2.0) #> tfruns 1.5.1 2022-09-05 [1] CRAN (R 4.2.0) #> tibble * 3.1.8 2022-07-22 [1] CRAN (R 4.2.0) #> tidyr * 1.2.1 2022-09-08 [1] CRAN (R 4.2.0) #> tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.2.0) #> tidyverse * 1.3.2 2022-07-18 [1] CRAN (R 4.2.0) #> timechange 0.1.1 2022-11-04 [1] CRAN (R 4.2.0) #> tzdb 0.3.0 2022-03-28 [1] CRAN (R 4.2.0) #> urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.2.0) #> usethis * 2.1.6 2022-05-25 [1] CRAN (R 4.2.0) #> utf8 1.2.2 2021-07-24 [1] CRAN (R 4.2.0) #> vctrs 0.5.1 2022-11-16 [1] CRAN (R 4.2.0) #> waldo 0.4.0 2022-03-16 [1] CRAN (R 4.2.0) #> whisker 0.4 2019-08-28 [1] CRAN (R 4.2.0) #> withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.0) #> xfun 0.35 2022-11-16 [1] CRAN (R 4.2.0) #> xml2 1.3.3 2021-11-30 [1] CRAN (R 4.2.0) #> xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.0) #> yaml 2.3.6 2022-10-18 [1] CRAN (R 4.2.0) #> yesno 0.1.2 2020-07-10 [1] CRAN (R 4.2.0) #> #> [1] /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library #> #> P ── Loaded and on-disk path mismatch. #> #> ─ Python configuration ─────────────────────────────────────────────────────── #> python: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2/bin/python #> libpython: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2/lib/libpython3.8.dylib #> pythonhome: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2:/Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2 #> version: 3.8.13 | packaged by conda-forge | (default, Mar 25 2022, 06:05:16) [Clang 12.0.1 ] #> numpy: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2/lib/python3.8/site-packages/numpy #> numpy_version: 1.23.2 #> tensorflow: /Users/nick/Library/r-miniconda-arm64/envs/greta-env-tf2/lib/python3.8/site-packages/tensorflow #> #> NOTE: Python version was forced by use_python function #> #> ────────────────────────────────────────────────────────────────────────────── ```