Hi,
I would like the output the mutation frequency from waterfall plot to a table, by gene instead of by sample. I am well aware of the argument (out) from function waterfall but i would like to output the subplot (% Mutant) by gene name instead of by sample name.
I have been failed to export the desired data as by default, the data frame will be output by sample. I tried function writeData but since I am quite new to R, I failed to find out the reason for such error:
writeData(waterfall(mutationData, mainRecurCutoff = 0.05, mainPalette
= mycolors, clinData = Clin_Data1, maxGenes = 30,
rmvSilent = TRUE, fileType = "Custom", out = "data",
variant_class_order = mutation_priority), file("Test.csv"))
> Error in writeData(waterfall(mutationData, mainRecurCutoff = 0.05, mainPalette = mycolors, : could not find function "writeData"
Is there a way the output the desired data frame by gene name and is the function writeData ready to use? Thank you in advance for any kind of suggestions!
Hi, I would like the output the mutation frequency from waterfall plot to a table, by gene instead of by sample. I am well aware of the argument (out) from function waterfall but i would like to output the subplot (% Mutant) by gene name instead of by sample name.
I have been failed to export the desired data as by default, the data frame will be output by sample. I tried function writeData but since I am quite new to R, I failed to find out the reason for such error: writeData(waterfall(mutationData, mainRecurCutoff = 0.05, mainPalette = mycolors, clinData = Clin_Data1, maxGenes = 30, rmvSilent = TRUE, fileType = "Custom", out = "data", variant_class_order = mutation_priority), file("Test.csv"))
> Error in writeData(waterfall(mutationData, mainRecurCutoff = 0.05, mainPalette = mycolors, : could not find function "writeData"
Is there a way the output the desired data frame by gene name and is the function writeData ready to use? Thank you in advance for any kind of suggestions!