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griffithlab / GenVisR

Genome data visualizations
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Error in geneViz_formatUTR when no UTRs #386

Closed adam-cornwell closed 6 months ago

adam-cornwell commented 2 years ago

GenVisR 1.28.0 geneViz_extrUTR returns NA when there are no UTRs, but geneViz_formatUTR checks for NULL and not NA. Results in an error from a later call to a BioStrings function. Adding a check for NA in geneViz_formatUTR on the return value from geneViz_extrUTR fixes it.

joegage commented 1 year ago

I have a fork of this repo that fixes this issue - feel free to use: https://github.com/joegage/GenVisR/blob/master/R/geneViz_formatUTR.R

I submitted a pull request, but there are pull requests still pending from 2016 so I'm not confident it will get fixed in this original repo.