griffithlab GenVisR issues

griffithlab / GenVisR

Genome data visualizations

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issues

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Fix for biomaRt dataset out of order

#299 mmoisse closed 7 years ago
2
Typo TvTi legend title 'Transistion/Transversion'

#298 u9090 closed 7 years ago
1
'Error: Insufficient values in manual scale.' with custom file type when 'mainDropMut=F'

#297 u9090 closed 6 years ago
5
Assign translational effect to custom variant_class values

#296 u9090 closed 7 years ago
11
'rmvSilent=TRUE' Bug with custom file type

#295 u9090 closed 7 years ago
2
Tweak widths of plots and make easier to maintain

#294 alanocallaghan closed 7 years ago
5
Add ability to display multiple fill variables for sample/gene in waterfall()

#293 zlskidmore opened 7 years ago
6
waterfall - clinical variable sort?

#292 mattiyeh opened 7 years ago
3
TvTi cannot handel objects of class data.table

#291 zlskidmore closed 7 years ago
1
cnSpec genome mapping error

#290 CodyRamirez closed 7 years ago
3
issue when plotting cell labels and removing silent mutations

#289 zlskidmore closed 7 years ago
0
Reduce confusion from coverageSpace in waterfall

#288 zlskidmore closed 6 years ago
1
ggplot2 deprecation in genCov

#287 zlskidmore closed 7 years ago
0
ggplot2 update hotfix, fixes #285

#286 zlskidmore closed 7 years ago
0
ggplot2 v.2.2.0 breaks alignment

#285 alanocallaghan closed 7 years ago
6
Bugfix in plot_proportions

#284 alanocallaghan closed 7 years ago
0
Alanocallaghan master

#283 zlskidmore closed 7 years ago
3
Add proportion/TvTi subplot

#282 alanocallaghan closed 7 years ago
1
Ordering of labels and breaks is different

#281 alanocallaghan closed 7 years ago
0
theme_bw on mutation burden part of waterfall causes minor misalignment of samples

#280 alanocallaghan closed 8 years ago
5
"CoMut" style proportion of mutation types in waterfall()

#279 alanocallaghan closed 7 years ago
7
Error in lolliplot if (nchar(x)%%3 != 0) { : argument is of length zero

#278 gaiusjaugustus closed 8 years ago
7
data parameter does not work if clinical data is specified

#277 zlskidmore closed 6 years ago
1
Cannot extract mutation signatures

#276 pradyumnasagar closed 8 years ago
2
Waterfall plots all genes requested by plotGenes parameter

#275 kkrysiak closed 6 years ago
1
Waterfall - Force genes to be plotted even if they have no mutations

#274 kkrysiak closed 6 years ago
1
waterfall fails with error if the samples in `plotSamples` do not match those in `sampleOrder` and a custom variant type is supplied

#273 zlskidmore closed 6 years ago
1
Variant_Classification problems

#272 shirleydaidai closed 7 years ago
1
GenVisR should support a grouping variable for relevant functions

#271 zlskidmore opened 8 years ago
0
Any support/workaround for R/Bioconductor version 3.2?

#270 keithcallenberg closed 8 years ago
2
Select GenVisR functions are unable to output plots within a loop

#269 zlskidmore closed 6 years ago
2
lolliplot should display the number of points on the y-axis

#268 zlskidmore opened 8 years ago
0
lolliplot should display the numeric value of the # of lollis when providing a lolli cutoff

#267 zlskidmore opened 8 years ago
0
Started compIdent vignette

#266 kcampbel opened 8 years ago
0
Create S3 classes to handle different file types

#265 zlskidmore closed 7 years ago
1
added roxygen tags

#264 zlskidmore closed 8 years ago
0
added ability for users to specify layers for compIdent

#263 zlskidmore closed 8 years ago
0
Changed vignettes so they no longer fail if there is a problem

#262 zlskidmore closed 8 years ago
0
Changed the loh average scale to 0.0 to 0.5 for both the tile and sli…

#261 jkunisak closed 8 years ago
0
changed vaf expectation to be from 0-1 instead of 0-100, fixes #238

#260 zlskidmore closed 8 years ago
0
genCov Log transform coordinates not in a consecutive order

#259 zlskidmore opened 8 years ago
0
add subsample functionality to genCov

#258 ahwagner closed 8 years ago
0
added function lohView

#257 zlskidmore closed 8 years ago
0
Add cohort option to lohView and cnView

#256 zlskidmore opened 8 years ago
0
Lohview2lohSpec

#255 zlskidmore closed 8 years ago
0
Add ability to facet in the waterfall plot

#254 zlskidmore opened 8 years ago
0
Waterfall enhancement - allow clinical value = NA to be displayed on legend and color defined by user

#253 kkrysiak closed 8 years ago
0
Waterfall bug - clinVarOrder function only works when clinVarCol function is used

#252 kkrysiak closed 8 years ago
0
Request to add total variant counts to TvTi plots.

#251 kkrysiak closed 6 years ago
1
enhance cnSpec, adde citation

#250 zlskidmore closed 8 years ago
0

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