Variant type-ahead should only pull sequence ontology terms from sequence_variant root.

griffithlab / civic-client

Web client for CIViC: Clinical Interpretations of Variants in Cancer

MIT License

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Variant type-ahead should only pull sequence ontology terms from sequence_variant root. #1530

Closed lsheta closed 3 years ago

lsheta commented 3 years ago

I think the current variant type-ahead when curating variant types pulls all terms from sequence ontology. It may reduce incorrect annotations if the type-ahead only pulled terms from the sequence_variant root. From Alex (in civic curation slack channel from Fri Oct 23, 2020): The general advice that I’ve seen is to pick the most specific forms relevant to the variant, such that they are not in a direct lineage and all chosen terms arise from the sequence_variant root concept.

susannasiebert commented 3 years ago

Instead of only importing certain parts of the SO, we decided to improve the variant type typeahead (https://github.com/griffithlab/civic-client/issues/1536). Closing this issue in favor of #1536