Additional sources / visualizations should be investigated from Genome Nexus

griffithlab / civic-client

Web client for CIViC: Clinical Interpretations of Variants in Cancer

MIT License

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Open kkrysiak opened 2 years ago

kkrysiak commented 2 years ago

Consider pulling in data from cancerhotspots.org. Comparison of other options not available through myvariant.info: https://docs.google.com/spreadsheets/d/1xML949NWzJGcvltjlquwSRIv79o13C_sfrVPAU5ci9Q/edit#gid=258442188

Although this makes me think that Cancer Gene Census through open-CRAVAT would be another good resource

Visualizations, including loliplots: https://docs.genomenexus.org/tools

malachig commented 2 years ago

Yeah, Open-CRAVAT integration would be great, has many of these annotations, and has been proposed here: https://github.com/griffithlab/civic-client/issues/1626