Closed malachig closed 2 years ago
Possible items for CRAVAT / CIVIC hackathon:
implement a new Open-CRAVAT (https://github.com/KarchinLab/open-cravat/wiki) annotator for integrating CIVIC information into CRAVAT variant processing (maybe make this a new kind of annotator that uses a web service to get data rather than a pre-compute so CIVIC data will always be fresh)
implement a Open-CRAVAT visualization widget for CIVIC results including a link-out to the CIVIC site for variant annotation details
Add a linkout from the CIVIC variant details page to the CRAVAT website Single Variant Page (example: http://www.cravat.us/CRAVAT/variant.html?variant=chr21_34859485_+_C_T)
There is interest in integration of CRAVAT and CIViC (possibly bi-directional?). In what specific ways? To be discussed with the Karchin Lab (https://github.com/KarchinLab).