griffithlab / civic-server

Backend Server for CIViC Project
MIT License
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Add additional disease terms that need special handling #675

Closed susannasiebert closed 3 years ago

susannasiebert commented 3 years ago

This PR adds a few DOIDs that are not in the cancer slim file and do not belong there but we still want to support them in CIViC.

It also handles a new class of disease terms that the DO does not wish to include in their ontology and so will never have a DOID.

coveralls commented 3 years ago

Pull Request Test Coverage Report for Build 578667598


Changes Missing Coverage Covered Lines Changed/Added Lines %
lib/importer/disease_ontology_mirror.rb 0 3 0.0%
<!-- Total: 0 3 0.0% -->
Files with Coverage Reduction New Missed Lines %
app/controllers/genes_controller.rb 1 83.54%
app/models/comment.rb 1 63.64%
app/models/concerns/moderated.rb 1 74.24%
app/models/concerns/with_countable_enum.rb 1 90.0%
app/models/disease.rb 1 69.23%
app/models/drug.rb 1 56.25%
app/models/evidence_item.rb 1 81.63%
app/models/gene.rb 1 84.21%
app/models/notification.rb 1 62.5%
app/models/on_site_subscription.rb 1 40.0%
<!-- Total: 34 -->
Totals Coverage Status
Change from base Build 558880154: -0.01%
Covered Lines: 2133
Relevant Lines: 13336

💛 - Coveralls