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griffithlab / civicpy

A python interface for the CIViC db application
MIT License
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synonymous CIViC variants with `=` in the name (e.g. `E55= (c.165G>A)`) cause VCF creation to fail #110

Closed susannasiebert closed 3 years ago

susannasiebert commented 3 years ago

File "/home/ubuntu/.local/lib/python3.7/site-packages/civicpy/exports.py", line 257, in writerecords assert '=' not in v

Suggested fix: replace the = with the wildtype amino acid e.g. E55= would be E55E.