griffithlab / civicpy

A python interface for the CIViC db application
MIT License
9 stars 5 forks source link

Improve collaboration #129

Closed dameyerdave closed 2 years ago

dameyerdave commented 2 years ago

I was just went through the code because I would like to start using the API v2 as soon as possible. I recognised some issues in the cache file you provide for download. As an additional information: the cache file is no longer compatible with v1 nor v2 the only cache file that worked was the one I hard updated using the cli. During working through the code willing to contribute I recognised that there are no formatting and lint packages or configs in this project. I thought I could make a proposal of how you could (if you agree) improve the collaboration with this PR.

In addition to that I resolved a package conflict that I recognised during a clean installation: vcfpy and pysam.

Many thanks for looking at it and perhaps include it.