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griffithlab / civicpy

A python interface for the CIViC db application
MIT License
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Support GRCH37 to 38 conversion #4

Open kkrysiak opened 6 years ago

kkrysiak commented 6 years ago

We've had users request that we provide GRCH38 coordinates. So either a query that could find CIViC evidence using 38 coordinates as a query, or a CIViC converter that just supplies EIDs of interest with 38 coordinates annotated as well (potentially the whole dataset).

ahwagner commented 4 years ago

We intend to support this in a future version, we will also support queries by CA ids, and both types of query will operate through the allele registry for normalization to GRCh37, the CIViC standard.

susannasiebert commented 4 years ago

PR #73 add this functionality for single coordinate searches. It isn't yet supported for bulk coordinate searches.