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griffithlab / civicpy

A python interface for the CIViC db application
MIT License
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Partial support for issue 65 #70

Closed ahwagner closed 4 years ago

ahwagner commented 4 years ago

This PR introduces provenance information for most first-class CIViC entities. Genes are an exception, additional work is ongoing on CIViC-server to address.

ahwagner commented 4 years ago

Hey @susannasiebert. I plan to release rc3 today with the content from this PR (and a related PR to document these changes) to get RTD working prior to having reviewers look at it. We can add in Genes (which requires the discussed changes over at civic-server) later this week / early next as rc4.

susannasiebert commented 4 years ago

@ahwagner https://github.com/griffithlab/civic-server/pull/556 should take care of the civic-server side of things.

ahwagner commented 4 years ago

😲 Wow, that was fast. Okay, then I'm not going to merge this yet, will roll in the Gene changes and documentation too. Stay tuned.

ahwagner commented 4 years ago

Err, actually–this isn't in production yet 🤦‍♂. So, merging as-is, will open up separate PR for Genes down the stretch.