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griffithlab / pVACtools

http://www.pvactools.org
BSD 3-Clause Clear License
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pVACview demo: some candidates dont show anchor heatmap #1059

Closed mhoang22 closed 6 months ago

mhoang22 commented 7 months ago

Installation Type

Standalone

pVACtools Version / Docker Image

NA

Python Version

No response

Operating System

No response

Describe the bug

When I use the demo data for pvacview, 2 candidates: ARID1B (5th candidate) and HSPA4 (6th candidate) dont show anchor heatmap. Other candidates show normal anchor heatmap.

How to reproduce this bug

I Loaded demo data on pvacview (https://griffithlab.shinyapps.io/pvacview/)

Input files

The demo data for pvacview

Log output

NA

Output files

Screen Shot 2024-02-06 at 2 14 01 PM

susannasiebert commented 6 months ago

Anchor weights for the specific allele in question (HLA-B*82:02) were not been calculated in our anchor weight table so this is expected and not a bug. Once #1030 is implemented, maybe this becomes more apparent?