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griffithlab / pVACtools

http://www.pvactools.org
BSD 3-Clause Clear License
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Version of tools used in pVacFuse #1092

Closed min-codes closed 1 month ago

min-codes commented 3 months ago

Hi @susannasiebert , how do i check version of each tools included in pVacTools in general, or more specifically pVacFuse? I looked here https://pvactools.readthedocs.io/en/latest/tools.html but it does not specify the tool versions, only the tool names. Would appreciate any pointers (maybe i can check within the docker image - by checking /opt)?. Thank you very much!

susannasiebert commented 3 months ago

Hi @min-codes, the versions used depend a bit on how you are running pVACtools exactly. For most of these tools you can find the version by running pip show <package_name> on the command line. For the IEDB prediction algorithms in particular you will find their versions in the README under /opt/iedb/mhc_i and /opt/iedb/mhc_ii (assume you are running with the standalone IEDB option). The README files also note the IEDB software versions itself. If you are using the IEDB API, you can find those prediction algorithm versions at http://tools.iedb.org/main/tools-api/. We are using the default versions.

susannasiebert commented 1 month ago

Closing this issue due to inactivity.