griffithlab / pVACtools

http://www.pvactools.org
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Only check for refseq_select_prot blast db species compatibility if ref proteome similarity step is run with blast #1115

Closed susannasiebert closed 1 month ago

susannasiebert commented 1 month ago

Running the reference proteome similarity step with non-human/mouse species and a reference proteome (peptide) fasta file would always fail the validation on the refseq_select_proteome and species compatibility. The refseq_select_proteome argument has a default so it's always set even if we run with a peptide fasta and not blast.