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griffithlab / pVACtools

http://www.pvactools.org
BSD 3-Clause Clear License
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Investigate use of igv-reports for genomic review of candidates #706

Open malachig opened 3 years ago

malachig commented 3 years ago

https://github.com/igvteam/igv-reports

Would be amazing if we could link out from pvacview rows to pre-generated igv-report files showing the DNA/RNA support for each variant.

chrisamiller commented 3 years ago

There is also https://github.com/brentp/jigv

Maybe these should be generated in the somatic workflow for all vars, then the immuno workflow could copy or softlink the ones that were top candidates? (https://github.com/genome/analysis-workflows/issues/1032)