Consider use of APE-Gen algorithm

griffithlab / pVACtools

http://www.pvactools.org

BSD 3-Clause Clear License

144 stars 59 forks source link

Consider use of APE-Gen algorithm #709

Open malachig opened 3 years ago

malachig commented 3 years ago

From the ITCR meeting. APE-Gen would be quite orthogonal to the current algorithms for pMHC prediction as it is based on 3D structure modeling of the pMHC

https://github.com/KavrakiLab/APE-Gen

malachig commented 3 years ago

And the related tool DINC perhaps?: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5679007/ http://dinc.kavrakilab.org/