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griffithlab / regtools

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
https://regtools.readthedocs.org
MIT License
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cis-splice-effects identify extra -j option #44

Closed yang-yangfeng closed 7 years ago

yang-yangfeng commented 7 years ago

documentation needs to be updated to reflect the additional -j option allowed in cis-splice effects (-j STR Output file containing the aberrant junctions in BED12 format.)

gatoravi commented 7 years ago

This is now in the docs!