Update the alternative splicing module to provide an alternative analysis workflow to StringTie/Ballgown

griffithlab / rnabio.org

website for the rnaseq course

http://rnabio.org/

MIT License

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Open kcotto opened 5 years ago

kcotto commented 5 years ago

Introduction to RegTools functionality. After HISAT2 alignment, QoRTs (written in Scala) performs QC but also processes RNA-seq data to produce count files needed for splicing analysis by DEXSeq and JunctionSeq.

malachig commented 3 years ago

In addition to DEXSeq and JunctionSeq. Some other tools that would be good to consider: