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grimbough / bioc-actions

GitHub Actions for developing and maintaining Bioconductor packages
MIT License
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argument "update" is missing, with no default #9

Closed grimbough closed 1 year ago

grimbough commented 1 year ago

I'm currently getting the following error from the setup-bioc action when using Bioc devel:

Error in .install_github(todo, lib = lib, lib.loc = lib.loc, repos = repos,  : 
  argument "update" is missing, with no default
Calls: <Anonymous> ... .install_updated_version -> .install -> .install_github

This seems to be coming from BiocManager, but I can't recreate it locally and it's not obvious why this only effects Bioc devel when BiocManager is a CRAN package.

grimbough commented 1 year ago

Reported and resolved in https://github.com/Bioconductor/BiocManager/issues/142