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grimbough / biomaRt

R package providing query functionality to BioMart instances like Ensembl
https://bioconductor.org/packages/biomaRt/
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SEC_E_CERT_EXPIRED #102

Open WhalleyT opened 5 months ago

WhalleyT commented 5 months ago

Hi when I run useEnsembl like so:

ensembl <- useEnsembl(biomart = "genes")
bm <- useDataset(dataset = "hsapiens_gene_ensembl", mart = ensembl)

I get the following issue:

Possible SSL connectivity problems detected.
Please report this issue at https://github.com/grimbough/biomaRt/issues
Error in curl::curl_fetch_memory(url, handle = handle) : 
  schannel: next InitializeSecurityContext failed: SEC_E_CERT_EXPIRED (0x80090328) - The received certificate has expired.

interspersed with different timeout errors in useDataset:

Error in curl::curl_fetch_memory(url, handle = handle) : 
Timeout was reached: [www.ensembl.org:443] Operation timed out after 10

I am using version 2.54.1.

Thanks!