Open Sherry520 opened 2 years ago
Unfortunately Ensembl doesn't provide and Archive for plants version 38. The have 37 and 40. You can see a full list of available archives in the "Archive Sites" section of https://plants.ensembl.org
You can use one of those archives with something like this:
library(biomaRt)
ensembl_plants_40 <- useMart(host = "https://eg40-plants.ensembl.org/",
biomart = "plants_mart",
dataset = "zmays_eg_gene")
I need to annote DEGs for Zea Maize of version 38, however the latest version is 52. My code is:
plants <- useEnsembl(biomart = "plants_mart",host = "http://plants.ensembl.org",version = 38)
However, it is not applicable to plants. listEnsemblArchives() can only get human information. Can you provide a code for plants? Error log: Error: Specified Ensembl version is not available. Use listEnsemblArchives() to view available versions.sessionInfo()