fix partial argument matching and bfcremove error

grimbough / biomaRt

R package providing query functionality to BioMart instances like Ensembl

https://bioconductor.org/packages/biomaRt/

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fix partial argument matching and bfcremove error #65

Closed LiNk-NY closed 2 years ago

LiNk-NY commented 2 years ago

Hi Mike, @grimbough This fixes a couple of minor issues in the package. Note. It affects downstream packages, e.g., GenomicFeatures with the error:

> mart <- useEnsembl(biomart="ENSEMBL_MART_ENSEMBL", host="https://www.ensembl.org")
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function ‘bfcremove’ for signature ‘"character"’
Calls: useEnsembl -> .listEnsembl -> bfcremove -> <Anonymous>

Thanks! Best, Marcel

grimbough commented 2 years ago

Great, thanks for providing those. I'll push them to the Bioc git shortly.