search

grimbough / biomaRt

R package providing query functionality to BioMart instances like Ensembl
https://bioconductor.org/packages/biomaRt/
32 stars 13 forks source link

Support for SurePrint G3 Human Gene Expression v3 8x60K Microarray Kit #68

Open SamThilmany opened 2 years ago

SamThilmany commented 2 years ago

To date biomaRt only supports the following Agilent assays:

> require(biomaRt) # version 2.52.0
> mart <- useMart('ENSEMBL_MART_ENSEMBL')
> mart <- useDataset('hsapiens_gene_ensembl', mart)
> listAttributes(mart)[grep('agilent', tolower(listAttributes(mart)[,1])),]
       name                                description                               page
123    agilent_cgh_44b                     AGILENT CGH 44b probe                     feature_page
124    agilent_gpl26966                    AGILENT GPL26966 probe                    feature_page
125    agilent_gpl6848                     AGILENT GPL6848 probe                     feature_page
126    agilent_sureprint_g3_ge_8x60k       AGILENT SurePrint G3 GE 8x60k probe       feature_page
127    agilent_sureprint_g3_ge_8x60k_v2    AGILENT SurePrint G3 GE 8x60k v2 probe    feature_page
128    agilent_wholegenome                 AGILENT WholeGenome probe                 feature_page
129    agilent_wholegenome_4x44k_v1        AGILENT WholeGenome 4x44k v1 probe        feature_page
130    agilent_wholegenome_4x44k_v2        AGILENT WholeGenome 4x44k v2 probe        feature_page

The currently available whole-genome human microarray by Agilent is the SurePrint G3 Human Gene Expression v3 8x60K Microarray (P/N G4851C). Is there any plan to add this to biomaRt?

Thank you in advance!